Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0764 ATGGCTTCCGAAGGCTTCACCGACAAGAATGCTGTGTTCAGGAAACTCAAGGCCAAGTCCGACAACAAGATGTGTTTTGATTGTAATGCGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGGTTCACATCAGCTTCGTCAGGTCTACAAATTTAGACTCATGGAGTGCAGAGCAGTTAAAGATGATGAGCTTTGGGGGAAACAACCGTGCACAGGCTTTCTTTAAGCAGCATGGATGGTCTGATGGAGGCAAAATTGAGGCTAAATATACATCAAGAGCTGCCGAGTTATATAGGCAATTGCTTTCTAAAGAGGTTGCTAAAAGTGTTGCTGAAGATGCAGGTTTGCCATCATCTCCTGTTGCTTCACAGTCAGCACAAGCAACTAATGGACTTGCTGATTTTAAGATCAATGAAGCCCCAAAAGAAAGTTCTTTGGGAAAGCAAGAAGCCTCTGATGTCCCTGTTTCACCGAAAGCTCCTCATACAGTTATGTCAAGTTCTGTCAAGAAGCCTATTGGTGCAAAGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTTTCCACCTCAACTAATAACACCCCTTCTGTTGGCTCTTCTTTTGCATCTCGCTTTGAGTACATTGAAAATGTTCAATCTTCTGAGATGAATTCTGGAGGCACACATGTGCTTAGCCATGTATCTCCACCAAAGTCATCAAGTTTCTTTGCGGAATATGGCATGGACAGCGGTTTTCAGAAGAAAGCAAGCTCAAATTCCTCAAAAGTGCAAATTGAGGAAAGTGATGAAGCTAGGAGGAAGTTCTCAAATGCAAAATCTATCTCATCAGCCCAATATTTCGGGGATCCGAGTAAAGCCAATGACATGGACTCTCAAGTTTCCTTGCAGAAGTTCTCAGGTTCAACGGCCATATCAAGTGCTGATCTCTTTGGTCACAGTTCAGATAATTCCCCCCTTGATGTTTCTGCCAGTGACTTGATCAATCGGCTCTCTTTCCAGGCACAGCAAGATTACTCTTCTCTCAAGAGTATTGCAGGTGAGACCGGGAAGAAACTCAGCTCCCTGGCATCAACTTTAATGACAGATCTTCAAGACAGAATCCTCTGA 1218 0.4458 MASEGFTDKNAVFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMSFGGNNRAQAFFKQHGWSDGGKIEAKYTSRAAELYRQLLSKEVAKSVAEDAGLPSSPVASQSAQATNGLADFKINEAPKESSLGKQEASDVPVSPKAPHTVMSSSVKKPIGAKRTGKSSGLGARKLTTKPSENLYEQKPEEPSVPVSTSTNNTPSVGSSFASRFEYIENVQSSEMNSGGTHVLSHVSPPKSSSFFAEYGMDSGFQKKASSNSSKVQIEESDEARRKFSNAKSISSAQYFGDPSKANDMDSQVSLQKFSGSTAISSADLFGHSSDNSPLDVSASDLINRLSFQAQQDYSSLKSIAGETGKKLSSLASTLMTDLQDRIL* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0764 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Vvi2g0764 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 405 - -
Vvi2g0764 405 MobiDBLite consensus disorder prediction 220 234 - -
Vvi2g0764 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Vvi2g0764 405 MobiDBLite consensus disorder prediction 157 234 - -
Vvi2g0764 405 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Vvi2g0764 405 Pfam Putative GTPase activating protein for Arf 12 111 IPR001164 GO:0005096
Vvi2g0764 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vvi2g0764 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vvi2g0764 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vvi2g0764 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Vvi2g0764 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Vvi2g0764 405 MobiDBLite consensus disorder prediction 284 306 - -
Vvi2g0764 405 Gene3D Arf GTPase activating protein 2 135 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0764 Vvi-Chr2 7471876 7480248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0764 13 91 C2H2 Transcription Factor Family AT4G21160 47.500 7.26e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0764 K12493 K11855 vvi:100252326 785.408