Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0763 ATGACGGAATATCGTGTGCCAACCATGAATCTGTGGACCGACGATAACGCTTCTATGATGGAGGCTTTTATAAGCTCTGATCTCTCTTCCTTTAGTTGGGGGCCATCCTCCGCTGCTTCTACGTCTACTCCTGCGCCTGACCCGTCAAGGAATCTCGCCCAATCTCAGCCTTCCATGGCCGTCTTCAACCAGGAGACCCTCCAGCAGCGACTTCAAGCCCTAATTGAAGGCGCCCGAGAGAGCTGGACCTACGCAATTTTTTGGCAGTCCAGCGTTGATTTCTCGGGTGCCTCTTTGTTAGGATGGGGTGACGGCTACTATAAAGGTGAGGAAGATAAAGGGAAGAGGAAGATGACCCCGTCGTCTGTTTCCGAGCAGGAGCACCGGAAGAAAGTGCTCCGGGAGCTGAATTCGCTCATTTCTGGGACGGCGTCGTCGTCGGACGACGCTGTCGATGAGGAGGTCACCGACACCGAGTGGTTCTTCCTTGTATCGATGACTCAGTCGTTTGTGAACGGCGCTGGGTTGCCGGGTCAGGCGCTCTTCAACTCGAGTCCGGTGTGGGTTGTCGGAACCGAACGGCTCATGAGTTCTCCTTGCGAGAGAGCCCGGCAGGCGCAGGTGTTCGGGTTACAGACTATGGTTTGTATACCATCGGCTAACGGCGTCGTCGAACTGGGCTCCACCGAATTGATTTACCAGAGCTCAGATCTGATGAACAAGGTTAGAGTTTTGTTCAATTTCAATAACCTTGAAGTTGGTTCATGGCCGATCGGAGCCGCCGCTCCCGACCAGGGCGAGAGCGATCCTTCGTCGCTCTGGATCTCCGATCCGACCTCTAATGTCGAAATCAAGGATTCTGTGAATGCTACAGCTACTGGAGCTTCCAATCCCATTGGTAATCAGCAGAATTCCAAGTCAATTCAATTTGAGAACCCTAGCTCAAGTAGTTTAACTGAAAACCCTAGTATTATGCATAATCCTCAGCAGCAACAGCAGATTCACACGCAGGGTTTTTTCACTAGGGAGTTGAATTTCTCAGAATTTGGATTTGATGGAAATAATGGGAGAAATGGTAACTTGCATTCCCTGAAGCCCGAGTCTGGGGAAATTTTGAATTTTGGAGACAGTAAGAGGAGTTCTTGTAGTGCGAATGGGAATATGTTTTCAGGTCATTCACAGGTAGTTGCAGAGGAAAATAAGAAGAGGAGGTCACCGACTTCAAGAGGAAGTGCCGAAGAAGGCATGCTTTCGTTTACTTCAGGTGTGATATTGCCATCCTCTTGTGTGGTGAAGTCAAGTGGTGGTGGTGGAGATTCTGATCACTCGGATCTTGAAGCTTCAGTGGTTCGGGAGGCAGATAGTAGTAGAGTGGTGGAACCAGAAAAAAGGCCTAGGAAGCGTGGGAGAAAACCTGCAAATGGAAGGGAAGAGCCATTGAATCATGTGGAGGCAGAGCGGCAGAGGAGGGAGAAGCTTAACCAGAGGTTTTATGCCCTCCGAGCTGTGGTTCCAAATGTGTCAAAGATGGATAAAGCCTCCCTTCTTGGTGATGCAATTTCATATATCAATGAGCTCAGGACAAAGCTACAAAGTGCAGAGTCGGACAAGGAGGACCTTCAGAAGGAAGTGAATTCAATGAAGAAGGAGTTGGCTAGTAAAGATTCACAGTACTCCGGTTCATCTCGACCACCTCCAGACCAAGATCTCAAGATGTCGAATCACCACGGTAGCAAATTGGTAGAAATGGATATTGATGTGAAGATAATCGGGTGGGATGCCATGATTCGAATTCAGTGTAGTAAAAAGAACCATCCTGCTGCAAAGCTTATGGGGGCTCTCAAGGAGCTGGACCTAGATGTGAACCACGCGAGTGTGTCGGTGGTGAATGATTTGATGATCCAACAGGCAACCGTGAAGATGGGAAGTAGGTTTTACACTCAAGATCAGCTGAGGCTAGCCCTGTCATCCAAATTTGCAGACAGCAGGTAG 1992 0.4925 MTEYRVPTMNLWTDDNASMMEAFISSDLSSFSWGPSSAASTSTPAPDPSRNLAQSQPSMAVFNQETLQQRLQALIEGARESWTYAIFWQSSVDFSGASLLGWGDGYYKGEEDKGKRKMTPSSVSEQEHRKKVLRELNSLISGTASSSDDAVDEEVTDTEWFFLVSMTQSFVNGAGLPGQALFNSSPVWVVGTERLMSSPCERARQAQVFGLQTMVCIPSANGVVELGSTELIYQSSDLMNKVRVLFNFNNLEVGSWPIGAAAPDQGESDPSSLWISDPTSNVEIKDSVNATATGASNPIGNQQNSKSIQFENPSSSSLTENPSIMHNPQQQQQIHTQGFFTRELNFSEFGFDGNNGRNGNLHSLKPESGEILNFGDSKRSSCSANGNMFSGHSQVVAEENKKRRSPTSRGSAEEGMLSFTSGVILPSSCVVKSSGGGGDSDHSDLEASVVREADSSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKEVNSMKKELASKDSQYSGSSRPPPDQDLKMSNHHGSKLVEMDIDVKIIGWDAMIRIQCSKKNHPAAKLMGALKELDLDVNHASVSVVNDLMIQQATVKMGSRFYTQDQLRLALSSKFADSR* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0763 663 FunFam Transcription factor bHLH13 470 544 - -
Vvi2g0763 663 MobiDBLite consensus disorder prediction 531 574 - -
Vvi2g0763 663 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 67 246 IPR025610 -
Vvi2g0763 663 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 477 526 IPR011598 GO:0046983
Vvi2g0763 663 PANTHER MYC 43 658 IPR045084 GO:0003700|GO:0006355
Vvi2g0763 663 MobiDBLite consensus disorder prediction 531 550 - -
Vvi2g0763 663 MobiDBLite consensus disorder prediction 381 415 - -
Vvi2g0763 663 MobiDBLite consensus disorder prediction 430 487 - -
Vvi2g0763 663 MobiDBLite consensus disorder prediction 551 568 - -
Vvi2g0763 663 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 480 548 IPR036638 GO:0046983
Vvi2g0763 663 MobiDBLite consensus disorder prediction 35 54 - -
Vvi2g0763 663 CDD bHLH_AtAIB_like 474 550 - -
Vvi2g0763 663 MobiDBLite consensus disorder prediction 444 487 - -
Vvi2g0763 663 MobiDBLite consensus disorder prediction 291 334 - -
Vvi2g0763 663 Coils Coil 523 557 - -
Vvi2g0763 663 SMART finulus 483 532 IPR011598 GO:0046983
Vvi2g0763 663 Pfam Helix-loop-helix DNA-binding domain 481 526 IPR011598 GO:0046983
Vvi2g0763 663 Gene3D - 469 556 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0763 Vvi-Chr2 7426904 7428895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0763 1 660 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.871 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi2g0763 bHLH-MYC_N 4.7e-56 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0763 K13422 - vvi:100250607 1237.63