Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0750 ATGGCTGCTGAGCTTGGCCTTGTGTCCTTGACCCAGCTCCAGAAATTGGCTCAGTCTCAGCAGCATCAACGCCCGGAGGAAGAAAACCCTAGCTCAACAAGCAGCTCGTGGATGTGGAACCCTAAGCAAGCACAGACACAAGCACAAGCACAAGCACAAGAAGATGATGATTCATGGGAGGTAAGAGCCTTTGCAGAAGACACTGGCAATATCATGGGCACCACTTGGCCACCTAGGTCATACACTTGCACTTTCTGTAGAAGGGAATTCCGTTCTGCCCAAGCCCTAGGAGGTCACATGAATGTGCACCGCCGCGACCGAGCGAGGCTCCACCAAACCCACCCGGGTTCAAACAACCCCACTTCATCATCCTCCACTAACTCATCATCCACCCTCATAATCCCAACCCAAGAATTCATCACAAATGGTGGGCTATGCCTTCTCTACCAGCTACCACCTAACCCTAATGCCCTCTTCACCCCTACTTCCATAAATTCATCACCACCACAAGGCATCGCTCTCTGTCCCTCCAGCAAACCCGAGCCGTCTGCAGTGTCCAATGGCGACGACGATAATGAGAATACCAGCAACAATTACAACGACTCAGCCATGGAGGAGCTTGATCTAGAGCTCCGACTAGGACACAGACCCTCGCCGTCATAA 663 0.5219 MAAELGLVSLTQLQKLAQSQQHQRPEEENPSSTSSSWMWNPKQAQTQAQAQAQEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQTHPGSNNPTSSSSTNSSSTLIIPTQEFITNGGLCLLYQLPPNPNALFTPTSINSSPPQGIALCPSSKPEPSAVSNGDDDNENTSNNYNDSAMEELDLELRLGHRPSPS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0750 220 MobiDBLite consensus disorder prediction 16 54 - -
Vvi2g0750 220 MobiDBLite consensus disorder prediction 160 220 - -
Vvi2g0750 220 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Vvi2g0750 220 MobiDBLite consensus disorder prediction 16 58 - -
Vvi2g0750 220 MobiDBLite consensus disorder prediction 180 203 - -
Vvi2g0750 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Vvi2g0750 220 PANTHER OS07G0101800 PROTEIN 53 217 - -
Vvi2g0750 220 Gene3D Classic Zinc Finger 72 133 - -
Vvi2g0750 220 SMART c2h2final6 81 103 IPR013087 -
Vvi2g0750 220 MobiDBLite consensus disorder prediction 113 130 - -
Vvi2g0750 220 MobiDBLite consensus disorder prediction 111 130 - -
Vvi2g0750 220 Pfam C2H2-type zinc finger 81 105 - -
Vvi2g0750 220 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0750 Vvi-Chr2 7241834 7242586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0750 34 217 C2H2 Transcription Factor Family AT4G17810 43.367 3.41e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi2g0750 zf-C2H2_6 4.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0750 - - vvi:100267849 403.675