Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0745 ATGGGTTGCTTCCAATCCAAAACCGCCCACCTCCACTCCCCTGACGATCCCTCCTCCACCCCTGAACCCACCGCCAAGCCCGATTCAGCTAATGGAGATCAGAGTGATCAGGAGCATCAAGTTCCCGCATTTAAGGAATACGGCCTCAGCGAGCTTCGCAAGGCTACCAACGGCTTCAGCAGCGACCACATAGTCTCCGAGAGCGGCGAGAAAGCTCCCAATGTTGTTTACAGAGGGAAACTCGACAGTAATCGCTTGGTTGCTGTCAAGCGCTTCTCCAAGCTGTCTTGGCCTGATGCTCAACAGTTTGTGGCGGAGGCGGCTGGGGTTGGGAAGGTTAGGCACAAGAGATTGGTGAATCTGATTGGTTGCTGTGCTGAAGGAGATGAACGGCTTTTGGTAGCAGAATACATGCCCAATGATACTCTTTCCAAGCATCTATTCCACTGGGATAAGCAACCACTTCCATGGGACATGCGTGTGAGAGTTGCATATTATATTGCTCAGGCACTTGATCATTGTAATACAGAAAACCGGAAGATCTATCATGATTTGAATGCATATAGAGTTCTTTTTGATGAGGATGGTGACCCTCGTTTATCAAGTTTTGGCCTTATGAAAAATAGTCGAGATGGTAAAAGCTACAGTACAAACTTGGCTTATACTCCACCAGAGTTTTTGCGAACAGGGAGGGTCATTCCAGAGAGTGTGATATACAGTTATGGAACAGTTCTATTGGACCTGTTGAGTGGGAAGCATATCCCTCCAAGTCATGCACTGGACTTAATAAGGGGGAAAAATGTATTGTTGTTGATGGATTCATCATTGGAAGGACAGTATGCCAATGATGATGCTACTAAGTTGGTTGAACTTGCTTCAAAATGTCTTCAGTCTGAGGCCAGGGATCGACCTGATACTAATTTTCTTCTTACAGCAGTAGCACCCCTTCAAAAGCAGAAAGAGGTGGCATCTCATGTTCTAATGGGCCTGACTAAGACTACAGTTGTGCTGCCAACCATGCTGTCTCCTCTTGGAAAGGCTTGTGCAAGGATGGATCTTACTGCTGTACATGATATATTGCTTAAAACAGGTTATAAAGATGAAGAGGGTGCGGAGAATGAGCTTTCATTTCAAGAATGGACACAACAAGTGCAAGAGATGTTGAACACAAAGAAATTCGGGGATATTGCATTTAGGGACAAGGATTTCAAGAGTGCAATTGATTATTATTCAAAGCTAGTAGTTATGATGCCTGTACCTTCGGCTACTGTCTTTGCAAGGAGAGCCCTCTCATACTTGATGATTGGACAAGCAGAACTTGCCTTGAGGGATGCCATGCAGGCTCAGGTATGCATACCAGAGTGGCCCACTGCATTCTATCTGCAGGCTCTTGCACTCTCCAAGCTTGGAATGGAAACAGATGCTCAGGACATGCTCAACGATGGGGCAGCATTCGAGGCCAAGAGGCACAACAGCTGGCGCAACTGA 1488 0.4644 MGCFQSKTAHLHSPDDPSSTPEPTAKPDSANGDQSDQEHQVPAFKEYGLSELRKATNGFSSDHIVSESGEKAPNVVYRGKLDSNRLVAVKRFSKLSWPDAQQFVAEAAGVGKVRHKRLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHWDKQPLPWDMRVRVAYYIAQALDHCNTENRKIYHDLNAYRVLFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRVIPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNVLLLMDSSLEGQYANDDATKLVELASKCLQSEARDRPDTNFLLTAVAPLQKQKEVASHVLMGLTKTTVVLPTMLSPLGKACARMDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQEMLNTKKFGDIAFRDKDFKSAIDYYSKLVVMMPVPSATVFARRALSYLMIGQAELALRDAMQAQVCIPEWPTAFYLQALALSKLGMETDAQDMLNDGAAFEAKRHNSWRN* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0745 495 FunFam probable serine/threonine-protein kinase At4g35230 385 494 - -
Vvi2g0745 495 Pfam Protein tyrosine and serine/threonine kinase 75 309 IPR001245 GO:0004672|GO:0006468
Vvi2g0745 495 FunFam probable serine/threonine-protein kinase At4g35230 34 137 - -
Vvi2g0745 495 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 22 490 IPR045845 GO:0004672|GO:0009742
Vvi2g0745 495 SUPERFAMILY Protein kinase-like (PK-like) 35 312 IPR011009 -
Vvi2g0745 495 Gene3D Transferase(Phosphotransferase) domain 1 139 331 - -
Vvi2g0745 495 Gene3D Tetratricopeptide repeat domain 385 494 IPR011990 GO:0005515
Vvi2g0745 495 FunFam probable serine/threonine-protein kinase At5g41260 139 330 - -
Vvi2g0745 495 SUPERFAMILY TPR-like 390 486 IPR011990 GO:0005515
Vvi2g0745 495 MobiDBLite consensus disorder prediction 1 42 - -
Vvi2g0745 495 MobiDBLite consensus disorder prediction 11 38 - -
Vvi2g0745 495 Gene3D Phosphorylase Kinase; domain 1 33 137 - -
Vvi2g0745 495 ProSiteProfiles Protein kinase domain profile. 62 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0745 Vvi-Chr2 7149568 7159643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0745 14 316 Glycoside Hydrolase AT3G07070 32.209 5.92e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vvi2g0745 PK_Tyr_Ser-Thr 2.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0745 K14500 - vvi:100264404 989.949