Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0736 ATGGGAGGCGCGTCTCTGCCCCCGGGGTTTCGTTTCCACCCCACAGACGAAGAATTGGTCGGATATTACCTGAAAAGAAAAGTAGAAGGCCAGAAATTTGAGCTTGAAGTGATTCCGGTGATCGATTTATACAAGTTTGATCCATGGGAGTTGCCTGATAAGTCGTTCCTTCCGAAACGGGACATGGAATGGTTCTTCTTCTGTCCTCGAGATCGGAAGTATCCTAATGGCTCAAGAACAAACAGAGCTACTAGAGCTGGCTACTGGAAAGCCACTGGGAAAGACAGGAAAGTTGTAGCTTGTCAATCCACTGTGATTGGGTACCGTAAGACCTTGGTTTTCTACCGAGGACGGGCACCTTTAGGGGACCGAACGGACTGGGTCATGCACGAGTATCGCCTCTGCGATGATCCTTCTCAAGGATCAGGTTTTCAGGGGGCTTTTGCTTTGTGTCGTGTTGTTAAGAAGAATGATCCGACACAAAAGTCAAGTGATTTCCATGGAGAAGCGAAAGGAAAGCAGGTGGGAAGCAGTTCAAGCAATGGTGATTTCACCTCCGCAGCAATCTCGAATGAGATCTTGAGCATCTCAGACAACATTCCATCTCAAGCTAGTCATGCATACAATGAGAGTAATTATTCGAGTCCTATGGCTTCCCCTTATGAAGCCGCACGGCCTGTGGATTTTGAGCTTTCTTCAAAGGGGACCAATCCTACAGACTTCTGGGTCTCACCTGATCTAATTCTAGATTCTTCAAAGGACTATCAGCAAGGACAAGAGACTGTATCTGAATTTGTTCCACAGTATGATTTTGCAAACTCAATGAGTTCATGGAATCCATACAGTGAAATCTCACCCTGTTCATCATACTCAAATTTTCCTGGGGAAGTTGAATTTGCCGATGACTTCAGTCGCATTGGCTGCATGTCGCCTTACTCAGGGGATCCCAATTACATGGGATTTTATGGAAATGAAGATGTACCTTATGAAGGGTTTGAAAATCAAGTTCCAATTTGCAGACAAGAGAGTGGAGATGAGAGTTTTGGGGAGTGTAGCGGTCTATGGTTGCAGGAAGACAACTTGGTGATTGTAATGTAA 1098 0.4545 MGGASLPPGFRFHPTDEELVGYYLKRKVEGQKFELEVIPVIDLYKFDPWELPDKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATRAGYWKATGKDRKVVACQSTVIGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDPSQGSGFQGAFALCRVVKKNDPTQKSSDFHGEAKGKQVGSSSSNGDFTSAAISNEILSISDNIPSQASHAYNESNYSSPMASPYEAARPVDFELSSKGTNPTDFWVSPDLILDSSKDYQQGQETVSEFVPQYDFANSMSSWNPYSEISPCSSYSNFPGEVEFADDFSRIGCMSPYSGDPNYMGFYGNEDVPYEGFENQVPICRQESGDESFGECSGLWLQEDNLVIVM* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0736 365 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Vvi2g0736 365 MobiDBLite consensus disorder prediction 159 182 - -
Vvi2g0736 365 FunFam Nac domain-containing protein 86 15 159 - -
Vvi2g0736 365 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Vvi2g0736 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 211 - -
Vvi2g0736 365 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vvi2g0736 365 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0736 Vvi-Chr2 7008499 7010385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0736 1 298 NAC Transcription Factor Family AT4G17980 54.605 2.87e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi2g0736 NAM 5.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0736 - - vvi:100255731 769.229