Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0733 ATGGGTTGTACTGTGAGAGAAAAGCACATCCGAACAACTCGCAGACCTCGATCGGTGAAAACTGACAACGATCACGCCAGTGCTTTTGATAGAGCATCGATATCCAAATCCATCTTTGATGCGGGTCTCAAACCCTTGGGTCACCATGTGGGCGTTCACGATTCTGGCCAAAACCCTCACCCCAACCCTAATTTCGACGACAGTGGGTGGGGTTACTGTACTGAGGAACAATTGGAGGAAATTCTATTGAAAAACTTGGAATTCTTGTACAATGAAGCCATCTCTAAGCTTGTTGCATTGGGATATGATGATGATGTTGCCCTGAAGGCGATACTGCGGAATGGGCATTGTTATGGGGGCATGGATGTGTTAACTAATATATTGCACAATTCTTTGGCCTATCTAAATAGTAATTGTGGAGGGGGCAGTAGTAATGTGAATTCGGATGAAGCTGAACCAGTTTTTTCAGATTTGAGGCAACTGGAAGAGTACTCTCTTGCGGGTATGATTTGTTTATTGCAACAAGTGCGACCCCATTTGACTAAAGGGGATGCAATGTGGTGTCTGCTCATGTGTGATCTTCATGTGGGTAGAGCTAGTACTATTGAAATTCCAGTTCTTCCTTCACCTATTAATAATAATGGGTGTGGTGGTCCTGTTAATAGTAATGCTAATGTTGAGAGTGTTAATAGTAGTAGTTCAGTTGGTGTTGCAGTGCCACCTCTATGTAAGTTTCATGGTGGTTGGGGATTTGGAAATGGACCAGTTTCAGAGTTTCCTGCTAATGGCCTTTTTCAATGTTCAACAGATGTGACTCTGCAAAGAGATATTGAGTGTCCAAAGAGGTTTAATCTTAGTCCTTCCATGAAGTCTTTGTTGAAGAGGAATGTGGCAATGTTTGCTGCTGGCTTCAGAGCAAGCTCTAAACAGTTGCAGACACAATCGCAGGCATGCCCAAGCTCTGTGTCAAGTGTGGATGCCACAACAGGAATTGTATCAGGGCCTGAAGTTCCGGTTGAACAGTATGAGGATCCAAATAATTCGAAGAACCTCGATATGGTGAATACAGTGTTAAGTAAATTCCGTGAGATGAATCTTGATGAGAATTTGGAGTTTGTGGCTGAAGATCAGAAGGATGAGATGGTACTGACTTTAATCCATCAGATTAAGGAACTCGATAGGCAGGTAAAAGAGCGGAGGGAGTGGGCTCACCAGAGGGCAATGCAAGCTGCTAGAAAGCTTAGTCATGATCTGACAGAGCTGAAGATGTTGAGAATGGAGATGGAGGAGACTCAACAGTTAAAGAAAGGGAAACAAACCCTTGAAGATACAACCATGAAGAGGCTCTCAGACATGGAGAATGCTTTGAGGAAGGCTAGTGGTCAAGTGGATCGTGCAAATGCAGCTGTGAGAAGGCTTGAGACTGAGAATGCAGAAATCAGAGCAGAGATGGAAGCTTCAAAATTAAGTGCATCAGAGTCAGTTTTAACCTGTTTAGAGGTTGCAAAAAGGGAGAAGAAGTGCCTGAAGAGGCTTTTGGCTTGGGAGAAACAAAAAACTAAGTTGCAGGAGGAGATTGGGGAGGAGAAGAGGAAGATAGTGGACTTACAACAACAGATGGTCCGAGTTGAGCAGGCACAGAAAGAAGCTGAGGTGAAGTGGAGGCAGGACTTGAAGGCTAAAGAGCTAGCCTTTGTACAAGTGGAGGAGGAACGACGTGCCAAGGAGGCAGCTGAGGCTAATAATAAAAGGAAGCTTGAGGCTCTGCGTCTAAAAATTGAGATAGACTTCCAGCGTCACAAGGATGATCTACAAAGACTTGAGCAGGAACTTTCTCGTCTTAAAGTGTCTGCTCAATCCACTGAGCTAGTTCATCCGTTGAATACATTACCTAATCGAGACTGTGAGGGGGCAAAGCCCCAAGGAGAAACAATTGCAAGGTTGCTTCATGAATTGGACAAACTGGAGGATTCTTCAGAGAAAGGAGTGAACAGTGACAGGGAATGCATAATTTGTTTAAAAGATGAAGTTTCTGTTGTATTCCTCCCATGTGCTCACGAGGTCCTGTGTGCCAACTGCAACGAGGATTATGGGAAAAAGGGTAAAGCCACTTGCCCATCCTGCAGGGCTCCAATTGAGCAGAGAATCCGTACTTTTGGTGCTAGTTCATAG 2172 0.4438 MGCTVREKHIRTTRRPRSVKTDNDHASAFDRASISKSIFDAGLKPLGHHVGVHDSGQNPHPNPNFDDSGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDDDVALKAILRNGHCYGGMDVLTNILHNSLAYLNSNCGGGSSNVNSDEAEPVFSDLRQLEEYSLAGMICLLQQVRPHLTKGDAMWCLLMCDLHVGRASTIEIPVLPSPINNNGCGGPVNSNANVESVNSSSSVGVAVPPLCKFHGGWGFGNGPVSEFPANGLFQCSTDVTLQRDIECPKRFNLSPSMKSLLKRNVAMFAAGFRASSKQLQTQSQACPSSVSSVDATTGIVSGPEVPVEQYEDPNNSKNLDMVNTVLSKFREMNLDENLEFVAEDQKDEMVLTLIHQIKELDRQVKERREWAHQRAMQAARKLSHDLTELKMLRMEMEETQQLKKGKQTLEDTTMKRLSDMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSASESVLTCLEVAKREKKCLKRLLAWEKQKTKLQEEIGEEKRKIVDLQQQMVRVEQAQKEAEVKWRQDLKAKELAFVQVEEERRAKEAAEANNKRKLEALRLKIEIDFQRHKDDLQRLEQELSRLKVSAQSTELVHPLNTLPNRDCEGAKPQGETIARLLHELDKLEDSSEKGVNSDRECIICLKDEVSVVFLPCAHEVLCANCNEDYGKKGKATCPSCRAPIEQRIRTFGASS* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0733 723 CDD RING-HC_MIP1-like 664 717 - -
Vvi2g0733 723 Coils Coil 568 588 - -
Vvi2g0733 723 Coils Coil 449 490 - -
Vvi2g0733 723 PANTHER OS05G0141500 PROTEIN 1 717 IPR046934 -
Vvi2g0733 723 SUPERFAMILY RING/U-box 668 715 - -
Vvi2g0733 723 Coils Coil 512 553 - -
Vvi2g0733 723 ProSiteProfiles Zinc finger RING-type profile. 669 709 IPR001841 -
Vvi2g0733 723 MobiDBLite consensus disorder prediction 1 24 - -
Vvi2g0733 723 SMART ring_2 669 708 IPR001841 -
Vvi2g0733 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 720 IPR013083 -
Vvi2g0733 723 Pfam Family of unknown function (DUF6592) 85 199 IPR046527 -
Vvi2g0733 723 Pfam Zinc finger, C3HC4 type (RING finger) 666 714 - -
Vvi2g0733 723 Coils Coil 590 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0733 Vvi-Chr2 6980890 6987333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0733 660 719 C3H Transcription Factor Family AT1G73950 41.667 3.36e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0733 - - vvi:100249004 1394.41