Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0729 ATGCCGGTTCCTCTTGCTCCATACCCGACGCCCCCAGTGCCATTTACACAGCCTGCAAATGGTGCACAGAGCCAACTTGTATGTTCTGGTTGTCGAAACCTTCTACTCTATCCAGTTGGAGCAAAGTCTGTATGCTGTGCTGTTTGCAATGTAGTCACAGCTGTTCCACTGCCTGGCACAGAAATGGCTCAGCTGGTCTGTGGGGGCTGCCACACCTTACTCATGTACATCCGTGGAGCAACAAGTGTACAGTGTTCATGTTGTCACACTATCAATCTAGCCTTGGAAGCAAATCAAGTTGCACATGTTAATTGCGGGAATTGCCGGATGCTGTTGATGTACCAATATGGAGCTAGATCTGTGAAATGTGCAGTTTGCAATTTTGTGACATCTGTTGGGGCCTCAACAAGCTCTACTGAACACAAGTTCAACTGCTAA 438 0.4772 MPVPLAPYPTPPVPFTQPANGAQSQLVCSGCRNLLLYPVGAKSVCCAVCNVVTAVPLPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTINLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASTSSTEHKFNC* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0729 145 NCBIfam zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Vvi2g0729 145 NCBIfam zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Vvi2g0729 145 NCBIfam zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Vvi2g0729 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
Vvi2g0729 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Vvi2g0729 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Vvi2g0729 145 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
Vvi2g0729 145 PANTHER PROTEIN LSD1 23 134 IPR040319 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vvi2g0729 zf-LSD1 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0729 - - vvi:100243854 283.108