Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0727 ATGAGCCTGGTGTTGGTAGTCTTGCATCAAGACAGACGATCTCTTCGCCCAATTCTGCCAGTGCTGGTTCTCAAGGATTCTTTGACTCGTGAACCAGGAATTAAGGCTGCAATCTTGAGCGGTGAGGGCAATGAAAAGGTCCAAGACCTACTGTTGTTGGATGTCATCCCTCTCTCCCTTGGTTCGGAGACTGCTGGTGGTGTCATGACTGTCTTGATTCCAAGGAATACAATGTGTGCAGCTTGCTATGAGAATGCCAGAAGCATAGTTGCATTCATCAACAAGTTTGAAAATGATAAGGGATTCGATAAATCCAATAACTCCACTGTCTTTCCTGCAAATTCCTCCAAGGGATTTTCAAATGCTTTGAAATGGGTGCAGGAAATGAAAGAGATAGAAGAGGGACTTAACAAGAAATTGAGCTTTCTTGGAGGATTTGCTGCTGCTTTCGAAGACCAAATTCACACTCATATTGAAGTCAAGCCAGGCCACAATGGACCTTCTTTATTTGCACATAGAACATTATTGGCAACAAGGTCAGAGATCTTCAAGAACATGCTGGACTCAGATGGATGCAAAGCTGCACCAAGTAACACCATAACACTCCCGGAATTGAACCATGAAGAACTGGATTCTCTCCTTGAGTTCCTCTACAGTGGAACCATGACTGCAGAGCAAGCTTATGAAGCAATGAACAATGCTGGGCACCTGGATTCTGACATGATTGTTATCCTTAACGACCACAGGCGGGTTTCATCACTCACTGCTACTCTAGATGGGCCCATACCACCTGTAGGAGCTTTGAGCAGTGCTTTTAATAGTGGTTCTAGATCAACACTTTTTGAAGAGCTTGGACTCTACTACATAGGTCCTGTCGATGGCCATGACATAGATGACCTCGTTGCCATTCTCAAGGAGGTTAAGAGTACCGAGACAACAGGTCCAGTTTTGATCCATGCTGTCATAGAGAAAGGCCACGGATATCCATATGCTGAGAAAGCTGCAGATCACCAACTTCAAAGTAGGGTACCATTCACACCTCAAGTCCACGTGCATGGCCATCTTTGGGCCATAGTGCCATTTCCCATTTCACCTTCTCTAATTTTGAAAAATATTCTTTTAAATCCCTTTCTTCAAATAATTTTCTAG 1149 0.4395 MSLVLVVLHQDRRSLRPILPVLVLKDSLTREPGIKAAILSGEGNEKVQDLLLLDVIPLSLGSETAGGVMTVLIPRNTMCAACYENARSIVAFINKFENDKGFDKSNNSTVFPANSSKGFSNALKWVQEMKEIEEGLNKKLSFLGGFAAAFEDQIHTHIEVKPGHNGPSLFAHRTLLATRSEIFKNMLDSDGCKAAPSNTITLPELNHEELDSLLEFLYSGTMTAEQAYEAMNNAGHLDSDMIVILNDHRRVSSLTATLDGPIPPVGALSSAFNSGSRSTLFEELGLYYIGPVDGHDIDDLVAILKEVKSTETTGPVLIHAVIEKGHGYPYAEKAADHQLQSRVPFTPQVHVHGHLWAIVPFPISPSLILKNILLNPFLQIIF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0727 382 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 78 364 IPR044784 -
Vvi2g0727 382 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 45 81 IPR029047 -
Vvi2g0727 382 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 277 321 IPR005477 GO:0008661|GO:0016114
Vvi2g0727 382 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 219 251 IPR005477 GO:0008661|GO:0016114
Vvi2g0727 382 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 35 84 IPR029047 -
Vvi2g0727 382 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 220 337 IPR029061 -
Vvi2g0727 382 CDD BTB_POZ_ZBTB_KLHL-like 165 223 - -
Vvi2g0727 382 Pfam Hsp70 protein 34 90 IPR013126 GO:0005524|GO:0140662
Vvi2g0727 382 Pfam BTB/POZ domain 167 230 IPR000210 GO:0005515
Vvi2g0727 382 SUPERFAMILY POZ domain 142 225 IPR011333 -
Vvi2g0727 382 Gene3D - 219 350 - -
Vvi2g0727 382 PRINTS 70kDa heat shock protein signature 22 42 - -
Vvi2g0727 382 PRINTS 70kDa heat shock protein signature 49 68 - -
Vvi2g0727 382 ProSiteProfiles BTB domain profile. 156 226 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0727 Vvi-Chr2 6881520 6882848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0727 34 107 Calmodulin-binding Proteins AT3G12580 58.750 5.16e-18 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi2g0727 DXP_synthase_N 4.1e-11 CL0254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0727 K10523 - vvi:100255303 278.87