Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0721 ATGGATTCACATGAACCGCAGCAACCGCAACAGCAGCAGCATCCTCCACACGGGATGATGATGGGCCCAAATTCATACCATACGAACATGGCGAACACATCTCCGATGATGAACCCTAATTCCGCGGCTATCATGCAGAATAATCGTTTCTCTTTCACTTCTATGGTCGCCTCAAAGCCCGTAGATTCTCCTTACGGCGATGGATCGTCAACTGGTTTGCGGCCTTGTGGGTTCAATATTGAGCCCGCTAAAAAGAAGAGAGGGCGGCCGAGGAAGTACGCCCCCGATGGCAACATTGCATTGGGCTTGGCCCCAACCCCTATTCCTTCCACTGCCGCGCATGGGGACGCTACTGGCACCCCATCTTCGGAGCCTCCGGCGAAGCGGAATAGGGGACGACCCCCAGGGTCGGGCAAAAAACAGCTTGACGCTTTAGGAGCGGCGGGAGTTGGCTTTACTCCACATGTTATTACTGTGAATGTTGGTGAGGACATAGCATCAAAGATCATGGCCTTTTCACAGCAGGGGCCCCGAACAGTTTGCATCCTCTCTGCAAATGGTGCCATCTGCAATGTTACCCTTCGCCAGCCAGCTATGTCTGGTGGTACTATTTCATATGAGGGTCGATTTGATATCATCTCTCTGTCAGGTTCCTTCTTGCTTTCAGAAGATAATGGTAGCCGCCATAGAACTGGTGGTTTGAGTGTGTCCTTAGCAGGTTCAGATGGTAGAGTTCTGGGTGGTGGAGTTGCAGGAATGCTAACGGCAGCAACACCTGTACAGGTTGTGGTAGGTAGCTTCATTGCAGATGGGAAGAAAACAAATACAAATCAGTCTGGGTCTTCATCAGCACCTCCAGCCCAGATGTTGAACTTTGGTGCACCTGTGGTACCGGCCAGTCCCTCTCAAGGGGGCTCAAGCGAATCATCCGATGAAAATGGTGGTAGCCCTCTTAACCGTGGTCCATTACCCTACAATAATGTTAGCCAGCCCATTCATCAAATGCCAATGTACGCAGCTATGGGCTGGCCAAACTCTACCATGAAGATGCTTCCGAATTAA 1062 0.5113 MDSHEPQQPQQQQHPPHGMMMGPNSYHTNMANTSPMMNPNSAAIMQNNRFSFTSMVASKPVDSPYGDGSSTGLRPCGFNIEPAKKKRGRPRKYAPDGNIALGLAPTPIPSTAAHGDATGTPSSEPPAKRNRGRPPGSGKKQLDALGAAGVGFTPHVITVNVGEDIASKIMAFSQQGPRTVCILSANGAICNVTLRQPAMSGGTISYEGRFDIISLSGSFLLSEDNGSRHRTGGLSVSLAGSDGRVLGGGVAGMLTAATPVQVVVGSFIADGKKTNTNQSGSSSAPPAQMLNFGAPVVPASPSQGGSSESSDENGGSPLNRGPLPYNNVSQPIHQMPMYAAMGWPNSTMKMLPN* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0721 353 CDD DUF296 153 267 IPR005175 -
Vvi2g0721 353 Gene3D - 154 282 - -
Vvi2g0721 353 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Vvi2g0721 353 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Vvi2g0721 353 FunFam AT-hook motif nuclear-localized protein 1-like 154 284 - -
Vvi2g0721 353 MobiDBLite consensus disorder prediction 62 143 - -
Vvi2g0721 353 MobiDBLite consensus disorder prediction 1 34 - -
Vvi2g0721 353 MobiDBLite consensus disorder prediction 300 328 - -
Vvi2g0721 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 24 322 IPR039605 GO:0003680
Vvi2g0721 353 MobiDBLite consensus disorder prediction 1 18 - -
Vvi2g0721 353 MobiDBLite consensus disorder prediction 275 328 - -
Vvi2g0721 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Vvi2g0721 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
Vvi2g0721 353 ProSiteProfiles PPC domain profile profile. 148 287 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0721 Vvi-Chr2 6805989 6816884 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0721 77 344 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 51.923 3.70e-81 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0721 - - vvi:100245362 678.707