Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0719 ATGGCTGGTTTGGATTTAGGCACTGCTTCTCGTTACATTCATCAGCTTCACCGTTCGGACTTGCACCTCCAGAGGCCACAGGACTCTGACGAAGACAACAACACCAACAGGGGTGGGGCTCAGTACTCCGGCGACCATCAGGACGATGTGGCGCACCATGGCCTCGAGCTCGTCAGCGCTAACGCCGGTCCCGGAGACATCGTGGCGCGGAGGCCCAGGGGTCGGCCACCTGGCTCCAAGAACAGGCCCAAGCCTCCGGTGATCATCACCAGAGAGAGTGCAAACACGCTTCGAGCTCATATTCTAGAGGTGGGTAATGGATGTGATGTGTTCGACTGTGTTGCCACCTATGCCCGCCGGCGGCAGCGGGGGATCTGTGTTCTGAGTGGGAGTGGAACGGTGACGAATGTGAGCATCAGGCAGCCGGCGGCCGCTGGGGCGATACTGACGCTGCATGGAAGGTTTGAGATACTTTCGTTATCTGGATCCTTCTTGCCGCCGCCTGCGCCGCCTGGTGCAACTAGTTTAACCATTTTCTTGGCCGGAGGGCAAGGCCAAGTCGTCGGGGGTAGCGTGGTGGGTGAGCTGACTGCGGCGGGGCCGGTTATTGTGATCGCAGCATCGTTTACTAATGTGGCCTATGAGCGATTGCCGTTGGATGAGGAGGAGCCACTCCAGATGCAGCAGCAGGTACCACAGTCTTCAGGTGGCGGAGGCGGTGGTATCAATAACCCATTTCCCGATCCATCGGCAGGGCTTCCGTTCTTCAATTTGCCCCTGAATATGCCGAATTGTCAGTTACCTGTGGACGGATGGGCGGGGAACTCAGGAGCTAGGCCACCATTCTGA 849 0.583 MAGLDLGTASRYIHQLHRSDLHLQRPQDSDEDNNTNRGGAQYSGDHQDDVAHHGLELVSANAGPGDIVARRPRGRPPGSKNRPKPPVIITRESANTLRAHILEVGNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPAAAGAILTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEEEPLQMQQQVPQSSGGGGGGINNPFPDPSAGLPFFNLPLNMPNCQLPVDGWAGNSGARPPF* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0719 282 MobiDBLite consensus disorder prediction 61 87 - -
Vvi2g0719 282 Gene3D - 97 232 - -
Vvi2g0719 282 MobiDBLite consensus disorder prediction 226 240 - -
Vvi2g0719 282 MobiDBLite consensus disorder prediction 18 47 - -
Vvi2g0719 282 FunFam AT-hook motif nuclear-localized protein 97 224 - -
Vvi2g0719 282 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 211 IPR005175 -
Vvi2g0719 282 MobiDBLite consensus disorder prediction 18 32 - -
Vvi2g0719 282 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 235 IPR014476 GO:0003680
Vvi2g0719 282 MobiDBLite consensus disorder prediction 224 246 - -
Vvi2g0719 282 CDD DUF296 98 181 IPR005175 -
Vvi2g0719 282 ProSiteProfiles PPC domain profile profile. 94 231 IPR005175 -
Vvi2g0719 282 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0719 Vvi-Chr2 6785373 6786221 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0719 1 282 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 68.421 4.43e-111 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0719 - - vvi:100262516 525.013