Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0718 ATGGATCCAGGTCGCTATGGTCTCCAGCAAGGATGGGATAATAACAGCGTAATTGTGGCTTTGGAGGGGTATGGAGCTGTTCATGACGCAAACTTCCGGGTTGGTGGTTCATATGATGATAGGAGGTTCCTAGATGAGCGGTTCTCAAGGGATAATGTCTATCCAAGGAATGCCTTCCATCGAGATATACTAGAGAGAGAGAACTACCCCCCTCCTCCATCTGCAGTTGGTCTTTGGCCTCAAACAAGAAGAAGAAGCTATGAGGAGGAATATTCACTTGACAGGGAATCTAGACGACATGAGAAGCCATACCTGGATTCTTACCATGAAATGGATACTTTTCGTGAAGCGGACAAGTACCATGAAGTTGATACATTTCAAGAATATGATAAGTTTCGGGATGGCTATCGTGGTATTGACAACTACCGTGATCATGGATTTGATAGGCCTTCTAGGTTTGGGGCACGTGATCGAGATGATCATGCATACGATGATTATGACTATCGATCTCGTCTTTCTCATCAAAATAGGGAGGATAGTCGTGAGAGGGACTATGACTATGGCAGACATAGTTATGATTCTGATTATGATAGAGGTAGTAGGAGAGACGGTAATTGGAGGAGGCGTGAATCACGTGACCGTGAGCGGGATAAGAGAGGTTTGAGTCGAGAAAGAGATCAGAGTCCACCTAGAAAGCATGAGCGTTCTAGGTCTCGTGGACGTGAAGATCGCCCTAGGTCAAGGTCTCCTCGTGGTCGGAGCCATGGTCGAAGTCATCGAGAGGACAGCTATGATGATGGTCGACATGAAAGGAGTGAAAAACGAAGGGATCGTGAAGATAAACGTCAGCATGAACATTATTCTGTGGCCCCTTCTGCTACTGTTGTTGTGAAGGGTCTATCACAGAAGACTACTGAGGAAGATCTGTACCAGATCCTTGCTGAATGGGGACCCCTTCGGCATGTTCGTGTGATTAAAGAACGAAGTTCTGGCATATCTCGAGGATTTGCTTTTATTGATTTTCCTTCTGTGGGAGCAGCACGTGTGATGATGGATAAAATTGGAGATGATGGTCTTGTTGTGGATGGCAGGAAGCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGGGGGGCAGGTGGACCGTTTGGACAGGAGAACACATTCAAATCAGGTCATATTAACCATAAAAGCATGACAGTACCATCAGACTGGATGTGCATCATATGTGGCTGTGTCAATTTTGCCCGGCGTACATCCTGCTTTCAGTGTAATGAAGTCCGGACTGATGAATCTCCACCAGCAGATATAGCATCATCAAATGCAACATCGCTAGGAAAGAAAGGATCAGAGGCAGGTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCATTTGTACATTTTCATTCGGTAGAGGATGCTACCAAAGCTCTTGAAGCAACAAATGGAACAACTCTGGAGAAAAATGGGCAGATTTTACGGGTAGCTTATGCAAAAAGCATTCTGGGTCCTGGATCAGGCACAACAGGATCTTCACAATCAAGCAGCCTTGCAGCAGCTGCAATTGAGGCAGCTACATTTGCTCAACAATATGATGCTGTTGGATGGGCGCCTAAAGAATATAATCCAGATGACAAACAGTCTACTGGTGGGCAGGATCGAGGAAACGGTGACCCTGCAGGTCAAAAGGATGGTTCAGCTCCACAGTCTGGTTTTGTGTGGGATGAAACATCTGGCTATTATTATGATGCTGCTTCTGGGTTCTACTATGATGGAAACACAGGCTTGTATTATGATGGTAACGGTGGAACATGGTATTCTTATGATCACTCAACTCAGCAGTATGTCCCTTGCACTGATCAGAATGACACTAAGACATCTGGAAAACAATCTGAGTCTTCTAAGGCATCAGATAGTTCTAATAGTAGAAAAGTAGTTATCTCTGCACCAGCTGCTACCATAACATCGAATGAGAAAGCTGCCTCACTGCCAGATGCTGTCCAGGCTGCTGCTACAGCAGCAATGGCTGCAGAAAAGAAAGAGAAAGAGAAGTTAAAGGAAATAAAACTTGCTTCCAAGAGCAGCATTCTGGCTAACAAAAAGAAAATGAGTAATGTACTGACAATGTGGAAGCAGAGGAGTCATGAAGGGCAAGCAACCCGCGTGGCTCTTGATGACAACCAGCCATCTGCTGCAGTTGATGACAGGCCCAATTCTATTGGGCCATCCCCGAAAGGCAAGTTCAGAACTGATGTGGTGACTACAAAGGAGCATACAGCAGCCTCTGGAGGATTTACTACAAGCACTCCTGCCCTGACTGTTGGTTTGGAGTCTCAGGTAAAGGCTAGGCCTGTGAGTAACAGCTTAGGAGGAACTGTGATGGGAGTAATAAGGGGATCTGGAAGAGGTGTAGTGAAATCAGATACCTCATATCTGGGATCATCAGGGGGAGTTTCTACTTCTGCTCCTGCTGCATACACTGCAGGTTCATCTTCATCAATAAATTCAGATACAACCTTGACAACCCCTTTTAGAACAGACGCATCTGCATTGGGTTCTTATACTCCACCTGTGGCTGCTGGGAGTGGCAAGAGGAGGTTTTCTGAAATGCCAGTACAGTTGGCTTCTACTCAGAAGGAACAGCCTCATACTACTTATAGGGATCGTGCGGCTGAGAGAAGGAGCTTGTATGGTTCATCATCTTCTACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAACCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCCCTGGTGTTGGGGGAGGGCGTGGGATGGGAGATGCTAATGGCAATGTTCAGAGTTATGAGGTGATTACAGCGGACAAAGCAATTGATGAAAGCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCGGGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCCATGGATAGTAGAGCTGGACTTGGGAGTCATCAGAAGAAGTTGGATCCAGGTCTTGAGGTGCAGCCTGGGGATAGTTATAGAACTCTCATTCAAAAGAAGGCACTTGCCAGGTTCCAAGAGATGTCTTAA 3222 0.46 MDPGRYGLQQGWDNNSVIVALEGYGAVHDANFRVGGSYDDRRFLDERFSRDNVYPRNAFHRDILERENYPPPPSAVGLWPQTRRRSYEEEYSLDRESRRHEKPYLDSYHEMDTFREADKYHEVDTFQEYDKFRDGYRGIDNYRDHGFDRPSRFGARDRDDHAYDDYDYRSRLSHQNREDSRERDYDYGRHSYDSDYDRGSRRDGNWRRRESRDRERDKRGLSRERDQSPPRKHERSRSRGREDRPRSRSPRGRSHGRSHREDSYDDGRHERSEKRRDREDKRQHEHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSVGAARVMMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGPFGQENTFKSGHINHKSMTVPSDWMCIICGCVNFARRTSCFQCNEVRTDESPPADIASSNATSLGKKGSEAGPIHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTTGSSQSSSLAAAAIEAATFAQQYDAVGWAPKEYNPDDKQSTGGQDRGNGDPAGQKDGSAPQSGFVWDETSGYYYDAASGFYYDGNTGLYYDGNGGTWYSYDHSTQQYVPCTDQNDTKTSGKQSESSKASDSSNSRKVVISAPAATITSNEKAASLPDAVQAAATAAMAAEKKEKEKLKEIKLASKSSILANKKKMSNVLTMWKQRSHEGQATRVALDDNQPSAAVDDRPNSIGPSPKGKFRTDVVTTKEHTAASGGFTTSTPALTVGLESQVKARPVSNSLGGTVMGVIRGSGRGVVKSDTSYLGSSGGVSTSAPAAYTAGSSSSINSDTTLTTPFRTDASALGSYTPPVAAGSGKRRFSEMPVQLASTQKEQPHTTYRDRAAERRSLYGSSSSTGDSLSDLGIGDSTRDSAFKKGSLDSMPFPPGVGGGRGMGDANGNVQSYEVITADKAIDESNVGNRMLRSMGWQEGSGLGKDGSGMVEPVQAQAMDSRAGLGSHQKKLDPGLEVQPGDSYRTLIQKKALARFQEMS* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0718 1073 MobiDBLite consensus disorder prediction 843 875 - -
Vvi2g0718 1073 MobiDBLite consensus disorder prediction 1033 1053 - -
Vvi2g0718 1073 MobiDBLite consensus disorder prediction 173 287 - -
Vvi2g0718 1073 CDD RRM1_RRM2_RBM5_like 453 533 - -
Vvi2g0718 1073 SUPERFAMILY Ran binding protein zinc finger-like 396 430 IPR036443 -
Vvi2g0718 1073 SUPERFAMILY RNA-binding domain, RBD 288 383 IPR035979 GO:0003676
Vvi2g0718 1073 MobiDBLite consensus disorder prediction 652 679 - -
Vvi2g0718 1073 MobiDBLite consensus disorder prediction 763 784 - -
Vvi2g0718 1073 PANTHER RNA-BINDING PROTEIN 192 1070 - -
Vvi2g0718 1073 SMART G-patch_5 995 1041 IPR000467 GO:0003676
Vvi2g0718 1073 Gene3D - 222 376 IPR012677 -
Vvi2g0718 1073 MobiDBLite consensus disorder prediction 140 161 - -
Vvi2g0718 1073 MobiDBLite consensus disorder prediction 573 604 - -
Vvi2g0718 1073 CDD OCRE_SUA_like 600 653 IPR035623 -
Vvi2g0718 1073 Pfam G-patch domain 998 1039 IPR000467 GO:0003676
Vvi2g0718 1073 MobiDBLite consensus disorder prediction 930 948 - -
Vvi2g0718 1073 ProSiteProfiles Zinc finger RanBP2 type profile. 400 429 IPR001876 -
Vvi2g0718 1073 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 455 535 IPR000504 GO:0003723
Vvi2g0718 1073 Gene3D - 437 607 IPR012677 -
Vvi2g0718 1073 SMART zf_4 402 426 IPR001876 -
Vvi2g0718 1073 MobiDBLite consensus disorder prediction 905 978 - -
Vvi2g0718 1073 SUPERFAMILY RNA-binding domain, RBD 453 540 IPR035979 GO:0003676
Vvi2g0718 1073 Coils Coil 1069 1073 - -
Vvi2g0718 1073 MobiDBLite consensus disorder prediction 173 290 - -
Vvi2g0718 1073 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 352 IPR000504 GO:0003723
Vvi2g0718 1073 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 457 523 IPR000504 GO:0003723
Vvi2g0718 1073 ProSiteProfiles G-patch domain profile. 997 1043 IPR000467 GO:0003676
Vvi2g0718 1073 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 373 IPR000504 GO:0003723
Vvi2g0718 1073 Pfam OCRE domain 604 652 IPR041591 -
Vvi2g0718 1073 ProSitePatterns Zinc finger RanBP2-type signature. 404 423 IPR001876 -
Vvi2g0718 1073 Gene3D - 395 430 - -
Vvi2g0718 1073 SMART rrm1_1 294 369 IPR000504 GO:0003723
Vvi2g0718 1073 SMART rrm1_1 456 531 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0718 292 519 Eukaryotic Initiation Factors Gene Family AT2G36660 24.903 2.96e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0718 K13094 - vvi:100250662 1933.69