Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0714 ATGGCTCTTCCTCCTCATTCTCTTCTGCTTGTTTTTGCATCTTTTTTTCTCATGCAATCGCTGGCCTATGCTGCTACATGCAGCGATTGTTTCACTCATTCTAGAGCAGCTTACTACCCAAATTCAGATGAACTAGGAACAGAAACTGGGCAATGTGGATACGGTTCATTTGGAGCTACAATCAATGATGGAGATGTATCAGCTGCATCTGATCTCTATAGAGATGGTGTGGGCTGCGGTGCTTGTTACCAGGTGAGATGTACCAACAGTAACTATTGCTCAGACAAAGGAGTGACTGTAGTGATCACTGATCATGGCTCGGGTGATCGTACTGACTTTATTATGAGCAAGCGAGCCTTTGGTCGAATGGCTCAGACTACTGATGCAGCTGCATCTCTATTGGCTCTTGGTGTGGTCGATATCGAATACAGAAGGGTATCATGCAGCTACCCCAGCAAAAATATAACAATCAAGATTGATGAGAACAGCAATTTTCCTTATTACATGGCTTTTGTCATATGGTACCAACAAGGCATGAAGGACATAACTGCTGTCCAACTATGTGAGACCCAGAATTTCGTGTGCAAGCTACTGGATAGGAGCTATGGTTCAGTATGGACGACTAATTCACCCCCAAGTGGGACCCTTTCTCTAAGGATGCTATTTAGTGGCGATGATGGAGATGAGACATGGGTTGTTCCTATTAACAACATACCTGAAAACTGGAAAGCTGCAGACATATATGACACAGGAGTTCAAGTGAACTAA 768 0.4375 MALPPHSLLLVFASFFLMQSLAYAATCSDCFTHSRAAYYPNSDELGTETGQCGYGSFGATINDGDVSAASDLYRDGVGCGACYQVRCTNSNYCSDKGVTVVITDHGSGDRTDFIMSKRAFGRMAQTTDAAASLLALGVVDIEYRRVSCSYPSKNITIKIDENSNFPYYMAFVIWYQQGMKDITAVQLCETQNFVCKLLDRSYGSVWTTNSPPSGTLSLRMLFSGDDGDETWVVPINNIPENWKAADIYDTGVQVN* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0714 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Vvi2g0714 255 Pfam Lytic transglycolase 70 143 IPR009009 -
Vvi2g0714 255 SUPERFAMILY Barwin-like endoglucanases 19 152 IPR036908 -
Vvi2g0714 255 PANTHER EXPANSIN-B3 18 253 - -
Vvi2g0714 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 250 IPR007117 -
Vvi2g0714 255 Gene3D - 17 149 IPR036908 -
Vvi2g0714 255 SUPERFAMILY PHL pollen allergen 153 249 IPR036749 -
Vvi2g0714 255 Gene3D - 151 254 IPR036749 -
Vvi2g0714 255 CDD DPBB_EXLB_N 32 148 - -
Vvi2g0714 255 Pfam Expansin C-terminal domain 155 234 IPR007117 -
Vvi2g0714 255 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Vvi2g0714 255 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Vvi2g0714 255 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Vvi2g0714 255 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0714 Vvi-Chr2 6705411 6707155 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0714 6 252 Expansin Gene Family AT4G17030 42.339 3.53e-63 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0714 - - vvi:100262694 530.791