Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0688 ATGGTTTGCACTGCTAATGATTTACAGGAGTGGAAGGATTTTCCTAAGGGACTTAGGGTCCTTCTCCTTGATGATGACACTACTTCTGCTGCTGAGATAAGATCAAAGCTTGAGGAAATGGACTATATTGTTTCTACATTCTGCAATGAGAATGAAGCTTTGTCAGCAATTTCAAGCAAACCTGAGAGCTTCCATGTTGCTATTGTAGAGGTCAGTACAGGCAACAATGGGAGTTTCAAGTTTCTCGAAACTGCTAAGGATTTACCCACCATTATGATTTCAAGCATCCATTGCCTGAGCACCATGATGAAGTGCATAGCACTCGGTGCAGTTGAGTTCCTTCGAAAACCACTGTCCGAGGACAAGCTCAGGAATATTTGGCAGCATGTAGTTCATAAGGCATTTAATGCAGGAGGGAGTGTCCTTCCTGAATCACTAAAGCCCGTCAAAGAATCTGTGGCTTCCATGCTGCAGCTCCAAATGGAAAATGAAGAACCAAGGAATGAAAGCTCAGCAGAAACACTGAATGTGTCCAATGTCCATGAAAATGACCATATGCAGTCAGCTGGAACTGATAAATACCCGGCACCTTCAACCCCACAATTAAAACAAGGAGGGAGATCATTGGATGATGGGGATTGCCTAGATCAAACTAACTGCTCAACTGAGAAAGAGAGTGGGGAGCAGGATGGGGAATCTAAATCTGTCGAAACTACATGTGGCACTTCAGTTGCTGAAGTTACTGCTCAGGTGTCTCCACCTCAAGGACTGGGCGAGAGCGTTATCAAAGAGGAAGATGATTCAGCTGATGGCTGTAAGAGTGAAAGTAATATGTCTCCTCATCCACAGAATAAAGACAGTCTCAGTGAGTTTGGTGGTGATGCTAGAAACCCCAGAAAGGCATCTGGTGTTCATAGTCCTTGTGGGACAAGAGCCAATCGGAAGAAAATGAAGGTAGACTGGACGCCTGAACTGCACAAGAAATTTGTGCAGGCAGTGGAGCAGCTGGGTGTGGATCAAGCCATTCCATCTCGAATATTAGAGCTGATGAAAGTGGAAGGCTTGACGAGGCATAATGTAGCAAGTCATCTCCAGCAGAAATACAGAATGCATCGGAGACACATTCTGCCAAAGGAAGATGATAGAAGATGGCCTCATCAGAGAGACCCAATGCAGAGGAATTATTATCCACAGAAACCTGTCATGGCCTTCCCTCCATATCATTCCAGTCACACCCTCCCAGCTGCTCAGCTCTACCCTGTATGGGGCCAACCCAGCAGCCACCCTGCTCAGATGTGGAGCACACCTGGCTATCATACATGGCAGCCCGCAGAAAGTTGGATTTGGAAGCCTTATCCAGGGATGAATGCCGATGCATGGGGCTGCCCTGTGATGACACCAACACATACTCCATGCTCTTCCTTTCCTCAAAATCCATCTGGGTTTGATCATAATAATGGAAGTGGAATATACAACACTGGCATACCACAGAGCCCTATTGACCTTTATCCGGCAGAGGAGTTAATTGACAGGGTAGTGAAGGAGGCAATAAGCAAGCCGTGGATGCCACTGCCATTGGGCCTGAAACCGCCGGCCACCGAGAGCGTGCTGGCGGAGCTCTCCCGCCAGGGCATCTCCACCATCCCACCTCACATCAACACCCCCCGTCCCTACTGA 1677 0.4758 MVCTANDLQEWKDFPKGLRVLLLDDDTTSAAEIRSKLEEMDYIVSTFCNENEALSAISSKPESFHVAIVEVSTGNNGSFKFLETAKDLPTIMISSIHCLSTMMKCIALGAVEFLRKPLSEDKLRNIWQHVVHKAFNAGGSVLPESLKPVKESVASMLQLQMENEEPRNESSAETLNVSNVHENDHMQSAGTDKYPAPSTPQLKQGGRSLDDGDCLDQTNCSTEKESGEQDGESKSVETTCGTSVAEVTAQVSPPQGLGESVIKEEDDSADGCKSESNMSPHPQNKDSLSEFGGDARNPRKASGVHSPCGTRANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQQKYRMHRRHILPKEDDRRWPHQRDPMQRNYYPQKPVMAFPPYHSSHTLPAAQLYPVWGQPSSHPAQMWSTPGYHTWQPAESWIWKPYPGMNADAWGCPVMTPTHTPCSSFPQNPSGFDHNNGSGIYNTGIPQSPIDLYPAEELIDRVVKEAISKPWMPLPLGLKPPATESVLAELSRQGISTIPPHINTPRPY* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0688 558 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Vvi2g0688 558 NCBIfam myb-like DNA-binding domain, SHAQKYF class 316 371 IPR006447 GO:0003677
Vvi2g0688 558 Gene3D - 18 137 - -
Vvi2g0688 558 SUPERFAMILY Homeodomain-like 315 372 IPR009057 -
Vvi2g0688 558 Pfam Myb-like DNA-binding domain 319 366 IPR001005 -
Vvi2g0688 558 SMART REC_2 18 127 IPR001789 GO:0000160
Vvi2g0688 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 313 372 IPR017930 -
Vvi2g0688 558 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 551 IPR044825 GO:0003700|GO:0045893
Vvi2g0688 558 MobiDBLite consensus disorder prediction 233 255 - -
Vvi2g0688 558 MobiDBLite consensus disorder prediction 185 315 - -
Vvi2g0688 558 FunFam Two-component response regulator-like APRR2 17 142 - -
Vvi2g0688 558 SUPERFAMILY CheY-like 16 133 IPR011006 -
Vvi2g0688 558 CDD REC_typeB_ARR-like 20 131 - -
Vvi2g0688 558 FunFam Two-component response regulator 312 376 - -
Vvi2g0688 558 Gene3D - 312 375 - -
Vvi2g0688 558 ProSiteProfiles Response regulatory domain profile. 19 131 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0688 Vvi-Chr2 6442672 6448197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0688 1 549 Response Regulator Gene Family AT4G18020 51.186 1.00e-149 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vvi2g0688 Response_reg 6.8e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0688 - - vvi:100250547 1154.04