Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0654 ATGAAGTGTTTTTTGTACTTTAGGGACAAATCCAAGTCCAAGCAATCAAAATCAGCACCAGAATTGAAAAACCAAAATAAATCGGATACTTCATCGGCATCGAGGACGACAAAATCAGCAGGTTCTATGGCATCGCCAAGGAGCATACCTGAATTGTACAGAGAGAAGGGTCAGGATTTGAGAGTTTTTTCTTTACCAGAGCTTAGAGATGCAACAAATGGTTTCAACAGGTTGTTAAAGATTGGAGAAGGTGGGTTTGGGAATGTATATAAAGGTACAATCAGCCCAGCAGATGGTCAGGGTAATCCCACTGTGGTTGCTATTAAGAAGCTTAATCAGCAAGGTTTTCAGGGGCATAAGGAATGGCTTGCAGAAGTTCAATTTCTCTCAGTTGTCAGTCACCCGAACCTTGTAAAACTTTTAGGGTACTGTTCTGTAGATGGAGAAAGAGGGATTCAACGGTTATTGGTATACGAGTACATGCCTAATAAAAGCTTAGAGAATCATCTTTTCAACAGGACAATGTCCACTCTTCCTTGGAAAATGAGACTACAAATTATTCTTGGTGCAGCTGAAGGATTGGCTTATCTGCATGAGGGTCTAGAAATCCAGGTTATATATCGAGATTTTAAATCCTCAAATGTGCTCTTGGATGAGAACTTCAACCCAAAGCTTTCAGACTTTGGGCTTGCTAGGGAGGGGCCAACGGGTGACCATACTCATGTATCCACAGCAGTTGTTGGGACACAAGGATATGCAGCCCCAGAATATATTGAAACTGGTCATCTCACTGTCAAGAGTGATATATGGAGTTTTGGTGTGGTGCTTTATGAGATCCTGACAGGCAGGAGAACAGTCGAAAGAAACCGCCCACAGTCAGAACAGAAGCTCCTAGATTGGGTAAAACAGTTCCCAGCTGATGGCAAAAGGTTCAGCATGATAATTGACCCACGGCTCAGAGACCAGTATTCTCTCGTTGCAGCGCGGAGAGTTGCTATGTTGGCTAACAGTTGCCTTAACAAGAATCCAAAAGATCGACCAACAATGAGGGAGGTGGTAGAAAGCTTGAAGAAAGCAATACAAGAATCAGAAGATGGAAACCCCTCTGATAGGAATCGGCCTGAGTCATCCCATAGTAACATGGCTAACTCCGATAGACGGAAAGATAAAATGGGAGCCACTGGTACAAGTACATCAAAGAAGAAGATACCCCCCATGCTTCAGCCAACCAAAAGATCCATTGTGGTCTAA 1251 0.4317 MKCFLYFRDKSKSKQSKSAPELKNQNKSDTSSASRTTKSAGSMASPRSIPELYREKGQDLRVFSLPELRDATNGFNRLLKIGEGGFGNVYKGTISPADGQGNPTVVAIKKLNQQGFQGHKEWLAEVQFLSVVSHPNLVKLLGYCSVDGERGIQRLLVYEYMPNKSLENHLFNRTMSTLPWKMRLQIILGAAEGLAYLHEGLEIQVIYRDFKSSNVLLDENFNPKLSDFGLAREGPTGDHTHVSTAVVGTQGYAAPEYIETGHLTVKSDIWSFGVVLYEILTGRRTVERNRPQSEQKLLDWVKQFPADGKRFSMIIDPRLRDQYSLVAARRVAMLANSCLNKNPKDRPTMREVVESLKKAIQESEDGNPSDRNRPESSHSNMANSDRRKDKMGATGTSTSKKKIPPMLQPTKRSIVV* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0654 416 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
Vvi2g0654 416 MobiDBLite consensus disorder prediction 18 44 - -
Vvi2g0654 416 MobiDBLite consensus disorder prediction 359 416 - -
Vvi2g0654 416 CDD STKc_IRAK 81 358 - -
Vvi2g0654 416 SUPERFAMILY Protein kinase-like (PK-like) 59 356 IPR011009 -
Vvi2g0654 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vvi2g0654 416 Gene3D Transferase(Phosphotransferase) domain 1 161 384 - -
Vvi2g0654 416 Pfam Protein tyrosine and serine/threonine kinase 80 356 IPR001245 GO:0004672|GO:0006468
Vvi2g0654 416 ProSitePatterns Protein kinases ATP-binding region signature. 81 110 IPR017441 GO:0005524
Vvi2g0654 416 MobiDBLite consensus disorder prediction 1 17 - -
Vvi2g0654 416 PANTHER OS01G0588500 PROTEIN-RELATED 28 361 - -
Vvi2g0654 416 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 161 368 - -
Vvi2g0654 416 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0654 416 MobiDBLite consensus disorder prediction 1 50 - -
Vvi2g0654 416 MobiDBLite consensus disorder prediction 380 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0654 Vvi-Chr2 5786291 5790565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0654 1 356 Glycoside Hydrolase AT3G07070 42.623 2.10e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi2g0654 PK_Tyr_Ser-Thr 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0654 - K00924 vvi:100264398 832.787