Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0652 ATGCTAAAGAGTAGAAATCCTTGGGGCGGATCAGAGAAGGGGAATGCAGGAAAAGAGGACTGTAACTCCATTTTTGATGAGCTTCAGTTCCAGAAACCTGGTTGTGGTTCTCAGTCTGGTTCTGATCATGGCCTTCATCCTGAAGGCACGGTTTGGGACATTATTCCTGGTATTAGAAATAGTATGTACAGACATCAATGTGAAGGTTTTGAATTCATTTGGAAGAATGTGGCTGGAGGCATTTACCTTGATGAGTTGAAAAGATCATCCTTTTCTGATGGTGGTAGTGGCTGCATTATATCGCATGCTCCTGGTACAGGAAAGACCCGTTTAACCATAGTCTTTCTCCAGACATACATGGAGCTTTATCCTGCATGCAGGCCAGTCATCATTGCTCCTCGCACCATGCTCCTTACATGGGAAGAAGAATTCAAGAAATGGAATGTTGATATTCCATTTCATAATCTGAACAAGCTAGAGTACTCTGGAAAGGAAAATATAACTGCTTTGAATTTTCTGAGGAGGATTAGCCATCAGGGACAAAGTGCAAAATCTATTCGTATGGTAAAGTTGTATTCATGGAAAAAGGATCGAAGCATCCTGGGGATCAGCTACACACTATTTGAAAAACTTGCCGGAGAACGAGTTCTTGCTGACCAAGAAAATAAGAAAGTTAAAGTACAGGATTACACTAAAGTGCAGGTAAGAAAAATCCTCCTTGAGCTTCCTGGTCTTTTAGTGCTTGATGAGGGGCACACACCTCGCAATGAACAAAGTCTTATCTGGAAGGCTTTGTCAAAAATTGACACAGAAAGGCGCATCATCCTCTCAGGAACTCCTTTCCAGAATAATTTTAAGGAGCTTTATAATACACTCTGCTTGGTGAGACCAAAGTTTGCTGACAGGATCGCTGTTGAACAGTATGGAGGCTTTCGTGGTAAGCGTGGGAGGAAAAGCAATGCAGCAAGAGGGAAATGGGATTTATTGACCAGTTCCATTGGCAAAATTGCCGATGATAAAGTAGAGGAACTAAGAGCCATGATCGAACCCTTTGTTCATATACACAAAGGCACAATACTTCAAGAAAATCTTCCAGGGTTGAAGGACTCTGTTGTTGTTTTACAACCATCTGATTTGCAGAGGAGGCTCCTTGAAAGCATTCGAGAAAAAAAGAACCCACTTGAACTGGGGTATTTAGTGTCCTTGATATCTGTACATCCCTCGCTGTTGCCCTCTGATGAAAGAAAACTGTTTTTTGACCAGACTAAGTTAGAAAAGATTAAATTGAATCCTGATATTGGTGTGAAAACAAAATTCCTGATGGCATTTATCAGGTTTAGTGAGACCATGAATGAGAAGGTTTTGGTCTTCAGTCAATTTTTAGATCCGTTGACCTATTTAATGGACCAACTTAAATATCATTTCCATTGGATTGTGGGAAAGGAGGTGTTGTACATGGATGGACAGCGTGATGTAAAGCAGCGCCAGTCCTCAATTAATACTTTCAACGATCCAGCCAGTCAAGTAAGGGTATTACTTGCATCAACAAAGGCTTGCTCTGAAGGGATCAGCCTGGTTGGTGCTTCTAGGGTCATTTTGCTTGATGTTGTTTGGAATCCATCAGTGGAAAGACAAGCTATAAGCAGGGCATACAGGCTTGGGCAGAGAAAAGTGGTGTACATATACCATCTGCTTACATCAGGGACAATGGAAGAGGAGAAGTACTGTCGACAGGCTAAGAAAGACCGACTATCTGAGTTGGTGTTTTCTTCTAAGGACAAGACTAGTGCTGGGAACAAAATTTCATCCACAGTTTCAGAAGATAAAATTTTGGAAGAGATGGTCCAGCACAACAAGTTGAAAGATATGTTTGATAAGATAATAAACCAACCAAAAGAATCAAATTTAATTGAAACTTTTGGTTTGGTGGATATCTAG 1938 0.4097 MLKSRNPWGGSEKGNAGKEDCNSIFDELQFQKPGCGSQSGSDHGLHPEGTVWDIIPGIRNSMYRHQCEGFEFIWKNVAGGIYLDELKRSSFSDGGSGCIISHAPGTGKTRLTIVFLQTYMELYPACRPVIIAPRTMLLTWEEEFKKWNVDIPFHNLNKLEYSGKENITALNFLRRISHQGQSAKSIRMVKLYSWKKDRSILGISYTLFEKLAGERVLADQENKKVKVQDYTKVQVRKILLELPGLLVLDEGHTPRNEQSLIWKALSKIDTERRIILSGTPFQNNFKELYNTLCLVRPKFADRIAVEQYGGFRGKRGRKSNAARGKWDLLTSSIGKIADDKVEELRAMIEPFVHIHKGTILQENLPGLKDSVVVLQPSDLQRRLLESIREKKNPLELGYLVSLISVHPSLLPSDERKLFFDQTKLEKIKLNPDIGVKTKFLMAFIRFSETMNEKVLVFSQFLDPLTYLMDQLKYHFHWIVGKEVLYMDGQRDVKQRQSSINTFNDPASQVRVLLASTKACSEGISLVGASRVILLDVVWNPSVERQAISRAYRLGQRKVVYIYHLLTSGTMEEEKYCRQAKKDRLSELVFSSKDKTSAGNKISSTVSEDKILEEMVQHNKLKDMFDKIINQPKESNLIETFGLVDI* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0652 645 Gene3D - 45 335 IPR038718 -
Vvi2g0652 645 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 298 IPR014001 -
Vvi2g0652 645 Gene3D - 365 638 IPR027417 -
Vvi2g0652 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 300 IPR027417 -
Vvi2g0652 645 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 11 635 IPR044567 GO:0080188
Vvi2g0652 645 SMART ultradead3 58 308 IPR014001 -
Vvi2g0652 645 CDD SF2_C_SNF 432 565 - -
Vvi2g0652 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 594 IPR027417 -
Vvi2g0652 645 Pfam SNF2-related domain 94 386 IPR000330 GO:0005524|GO:0140658
Vvi2g0652 645 SMART helicmild6 469 554 IPR001650 -
Vvi2g0652 645 Pfam Helicase conserved C-terminal domain 439 554 IPR001650 -
Vvi2g0652 645 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 439 595 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0652 Vvi-Chr2 5723377 5725314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0652 448 594 RAD5 or RAD16-like Gene Family AT5G05130 39.189 5.07e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi2g0652 SNF2_N 2.4e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0652 K10875 - vvi:100267731 1281.93