Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0651 ATGACTAAGCGAACAAAGAAGGCTGGTATTGTTGGGAAATATGGTACCCGTTATGGAGCTAGTCTGCGTAAGCAGATTAAGAAGATGGAGGTTAGTCAGCATAGCAAATACTTCTGTGAATTTTGTGGAAAGTATGCAGTGAAGAGGAAAGCTGTAGGGATCTGGGGCTGCAAGGATTGTGGCAAAGTAAAAGCAGGCGGAGCCTATACTTTGAATGCTGTAACTGTCAGGAGTACCATTCGGAGGCTGAGGGAGCAAACTGAGAGTTGA 270 0.4519 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNAVTVRSTIRRLREQTES* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0651 89 NCBIfam ribosomal protein eL43 1 88 IPR002674 GO:0003735|GO:0005840|GO:0006412
Vvi2g0651 89 SUPERFAMILY Zn-binding ribosomal proteins 10 74 IPR011332 GO:0006412
Vvi2g0651 89 FunFam 60S ribosomal protein L37a 2 89 - -
Vvi2g0651 89 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 4 72 IPR002674 GO:0003735|GO:0005840|GO:0006412
Vvi2g0651 89 PANTHER ZGC:171772 1 89 - -
Vvi2g0651 89 Gene3D - 1 89 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vvi2g0651 89 Pfam Ribosomal L37ae protein family 4 85 IPR002674 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0651 Vvi-Chr2 5716354 5719426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0651 1 89 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 91.304 4.86e-56 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0651 K02921 - tcc:18606129 179.489