Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0636 ATGGAGGAGAGGTACGATGCATTGAAGGAGCTTGGGTCTGGGAATTTTGGGGTGGCAAGGCTGGTGAGGGACAAGAAGACGAAGGAGCTTGTTGCAGTCAAGTACATTGAGAGAGGGAAAAAGATTGATGAAAATGTGCAGAGGGAAATCATCAATCACAGATCCTTGAGACATCCAAATATTGTCAGGTTCAAGGAGGTCTTGTTAACTCCAACGCATTTGGCCATTGTCATGGAATATGCAGCTGGTGGTGAACTCTTTGAGAGGATATGCAACGCTGGTCGGTTTAGTGAAGATGAGGCGAGATTTTTCTTCCAGCAGCTAATATCCGGAGTGAGCTACTGTCATTCTATGGAAATTTGTCATAGAGATCTGAAACTGGAGAACACACTCCTGGATGGAAGTCCAATGCCACGGCTTAAAATATGCGACTTTGGCTATTCCAAGTCTGCTTTGTTGCACTCACAACCCAAATCAGCAGTTGGAACTCCAGCATACATTGCCCCTGAGGTCCTGTCGCGAAAGGAGTATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGTGTGACTTTATATGTGATGTTGGTGGGAGCCTACCCTTTTGAGGATCCTGAAGATCCTAGAAATTTCCGGAAGACCATTGGGAGAATAATGAGTGTCCAGTACTCCATACCCGACTATGTACATGTATCTGCAGAATGCAGGCAGCTCCTTTCCCGTATTTTTGTTGCGAATCCTGCAAAGAGGATCACCATCCCAGAGATAAAACAACATCCTTGGTTTCTTAAAAATTTTCCCAAGGAGCTCATTGAAGGGGAGAAAACTAACTACGGGGAATTGCACCATGACCAACTGGTTCAAAGTGTTGAAGAAATAATGCGAATCATTCAAGAAGCAAGGACACCAGGGGAAGGATCCAAAGTTGATGGGCACAGTCTAGATGGAGCATTAGACTCTGATGACTTGGAGGCCGATTTGGAATCTGAAATTGATGTCAGCGGGGAGTTCATGGCCCCTGTGTGA 1023 0.4536 MEERYDALKELGSGNFGVARLVRDKKTKELVAVKYIERGKKIDENVQREIINHRSLRHPNIVRFKEVLLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARFFFQQLISGVSYCHSMEICHRDLKLENTLLDGSPMPRLKICDFGYSKSALLHSQPKSAVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIMSVQYSIPDYVHVSAECRQLLSRIFVANPAKRITIPEIKQHPWFLKNFPKELIEGEKTNYGELHHDQLVQSVEEIMRIIQEARTPGEGSKVDGHSLDGALDSDDLEADLESEIDVSGEFMAPV* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0636 340 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0636 340 SUPERFAMILY Protein kinase-like (PK-like) 3 273 IPR011009 -
Vvi2g0636 340 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Vvi2g0636 340 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Vvi2g0636 340 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0636 340 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Vvi2g0636 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Vvi2g0636 340 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Vvi2g0636 340 CDD STKc_SnRK2 4 260 - -
Vvi2g0636 340 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0636 340 Gene3D Transferase(Phosphotransferase) domain 1 81 269 - -
Vvi2g0636 340 PANTHER SERINE/THREONINE KINASE 3 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0636 Vvi-Chr2 5557832 5562087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0636 4 281 CBL-interacting serine-threonine protein kinases AT4G24400 42.509 2.46e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vvi2g0636 Pkinase 4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0636 K14498 - vvi:100243594 658.677