Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0612 ATGAAAGAAGAAGACGCCGGACCGCCCAACAGAGAACTCTACGCGCTTCTCAACATCTCTCCCGACGCCTCGGATGAAGAAATCAGAAAAGCGTATCGTCAATTCGCCCAAGTCTATCATCCTGACAAATACCAACCTCATCAGATGAAGGAAATTGCTACAGAGAACTTCCAAAGGATATGTGAAGCATATGAAATTTTATCTGATGAGCATAAAAGGCAGATATATGATATATATGGTATGGAAGGGCTGACTGCAGGCCTGGAACTTGGTCCAAAACTGAATAGAGCTGAAGAGATTAAGCAAGAATTTGAAAGATTACGACGTAGGAAGGAACAAGAGAAGGTCTCAGCCCATATTCGTCCTTCTGGTTCAATTTTAGCCAATTTGTCTTTGCCTGAGTTTCTTAATGGTGATGGCATCATGATAGGCATGTCTATGTCTAGTGACCTCCAAGCTCAAATATCCAAACGCAATGCTATTGCTATTGGTGGAAATTTGGCAGTTAATGGGAATGTTGGTGGTGGAGCAGCTACTGCTGTCTTTAGGCATCAGATTTCTTCAGTTTCTTCAATAGAATTCATGGCCTCAGCTGGTTTACGGGCATTAATTGGCATACAAACATCACGCAATCTATCACTTCACTCAACTGCAACAACTGGAATTGCAGTGTCTTTGAGAGATGGTTCAATCAATCTTACCAATGCCTGGACTCGTCAACTGTCTGAAACGACAAGCGGAACTATACAGCTGGCTTTGGGTCCAGAATCATCCGTTGCTGTTGGATGGCAAAAGAAGGAAGAGAAAATGTCTGCTTCTGGAGAACTGAAGTTTGGAACAAGTTCTTTTGGGGCAACTGCGAGTTACATTCGTCGCTTCTCCTCAAAATCTCATGGTCGTATTGCAGGCAGAGTTGGAAGCTCTGCTCTTGAGATTGAAGTTGGGGGTGGAAGGAAATTATCTGATTTCAGTACTGTCCGCATGTTATATTCTATAGGAATTCAGGGCATTTATTGGAAAATTGAATTTCATCGTGGAGGTCAAAAGCTAATTATTCCTATTCTGCTTTCCAGGCAATTGGATACTGTGTTTGCAACTGGAGCTTTTATGATTCCAACATCAATTTACTTTTTACTCAAGAAATTTATTGTCAAACCATACTACCTTAGGCGGGAAAAGCAGAAGAAATTAGAGAATATAGAGAAAACTTCGGTGCAGGTTCAAGAGGCAAGGGCGGCAGCTGAGAAAGCCCAACAGTTGTTACAAAATGTAGCCAATAGGAAGAGAAATAGACAGTTAGAAACAGGTGGACTTGTCATTACCAAAGCAGTTTATGGTAATCGGAAAGCTTTGAATGAACCAGGAGAAGGAGATGATCAATTAGCTTCACAAGTTGTTGATGTCACTTTGCCCTTAAATTTTTTGGTTAATGATTCTGGGCAACTCAAGCTTCACGAGGGTGTAAAGAAATCGGGCATTATGGGCTTCTGTGATCCATGTCCAGGAGAACCCAAGCAGTTGTATGTGGAGTACACTTATGGTGGCGATAGATATGAGGTGATAGTTGATGATTATGAGGAGTTGCTAATACCCCAGAGATCACATAGAGCCTGA 1614 0.4188 MKEEDAGPPNRELYALLNISPDASDEEIRKAYRQFAQVYHPDKYQPHQMKEIATENFQRICEAYEILSDEHKRQIYDIYGMEGLTAGLELGPKLNRAEEIKQEFERLRRRKEQEKVSAHIRPSGSILANLSLPEFLNGDGIMIGMSMSSDLQAQISKRNAIAIGGNLAVNGNVGGGAATAVFRHQISSVSSIEFMASAGLRALIGIQTSRNLSLHSTATTGIAVSLRDGSINLTNAWTRQLSETTSGTIQLALGPESSVAVGWQKKEEKMSASGELKFGTSSFGATASYIRRFSSKSHGRIAGRVGSSALEIEVGGGRKLSDFSTVRMLYSIGIQGIYWKIEFHRGGQKLIIPILLSRQLDTVFATGAFMIPTSIYFLLKKFIVKPYYLRREKQKKLENIEKTSVQVQEARAAAEKAQQLLQNVANRKRNRQLETGGLVITKAVYGNRKALNEPGEGDDQLASQVVDVTLPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGEPKQLYVEYTYGGDRYEVIVDDYEELLIPQRSHRA* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0612 537 Coils Coil 94 117 - -
Vvi2g0612 537 SMART dnaj_3 11 72 IPR001623 -
Vvi2g0612 537 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Vvi2g0612 537 PANTHER CHAPERONE PROTEIN DNAJ 13 1 536 IPR042162 -
Vvi2g0612 537 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Vvi2g0612 537 Pfam DnaJ domain 13 77 IPR001623 -
Vvi2g0612 537 Pfam DnaJ-like protein C11, C-terminal 386 531 IPR024586 -
Vvi2g0612 537 Coils Coil 390 434 - -
Vvi2g0612 537 CDD DnaJ 12 69 IPR001623 -
Vvi2g0612 537 SUPERFAMILY Chaperone J-domain 10 83 IPR036869 -
Vvi2g0612 537 PRINTS DnaJ domain signature 72 91 IPR001623 -
Vvi2g0612 537 PRINTS DnaJ domain signature 32 47 IPR001623 -
Vvi2g0612 537 PRINTS DnaJ domain signature 52 72 IPR001623 -
Vvi2g0612 537 PRINTS DnaJ domain signature 14 32 IPR001623 -
Vvi2g0612 537 Gene3D DnaJ domain 2 91 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0612 Vvi-Chr2 5297318 5325864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0612 14 79 C2H2 Transcription Factor Family AT1G74250 42.647 9.84e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0612 K09531 - vvi:100259128 1014.99