Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0578 ATGTGCAGGAAACTGAGGATAAAGAGATCGTTCAAAGTTCCAGCTATAAGCAATAAACTAGCAGATATACCTCCTGATGACTTCTCTTGGAGGAAATACGGGCAAAAGCCCATAAAAGGATCTCCACATCCAAGGTATTTTGATGTTCTTCCTACCTTTTCTTCATGTTATCAAGATCCTTTCAGACTGGCCATCCATTACTTTATGGTTGTTAGTTTCCATAGTCCAATATCAAAGTTTATAATTTGTGGGACTCTGTTCTGCTTGTTGCATCTTGGATCATCTATTCACATTTTTCTTTTTCTGGATCTGACATGA 318 0.3774 MCRKLRIKRSFKVPAISNKLADIPPDDFSWRKYGQKPIKGSPHPRYFDVLPTFSSCYQDPFRLAIHYFMVVSFHSPISKFIICGTLFCLLHLGSSIHIFLFLDLT* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0578 105 Pfam Plant zinc cluster domain 3 22 IPR018872 -
Vvi2g0578 105 SMART WRKY_cls 24 76 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g0578 105 ProSiteProfiles WRKY domain profile. 19 56 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g0578 105 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 46 IPR044810 GO:0003700
Vvi2g0578 105 SUPERFAMILY WRKY DNA-binding domain 22 47 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g0578 105 Gene3D WRKY domain 4 73 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g0578 105 Pfam WRKY DNA -binding domain 26 47 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0578 Vvi-Chr2 4989461 4989778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0578 3 47 WRKY Transcription Factor Family AT3G04670 86.667 4.62e-24 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi2g0578 WRKY 5.4e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0578 - - vvi:100267695 96.6709