Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0568 ATGGATTTGAAGTCGAACCATGCTTCTCCTGTTCTTACTGATCCTGCACCTGTGAACAAATCAAGACTAGGCATCCCTTCTGGTCTGTTGCCTTACTCGCAACCAGGAACAGGATTCTCCTCTGGAAAGTATGTAATAATTCCAAGAAAAAAGCCAGGAAAGCTTGATGACGTTCGGTCAAATGGTTGGCTGGATGCCATGAAATCGTCCTCTCCTCCTCGCAAGAAGTTAATTAAGGATTTCAATGTCGAGGTTGCTACAGATGACACTGATAATGTGACAAGCTCTTGGATGCTTAAGTATCCATCAGCGCTCAACTCTTTTGAGAAAATCATAAGTTATGCACAAAGCAAGAAGATAGCAATGTTTCTGGATTATGATGGGACTCTTTCTCCAATTGTTGATGATCCTGACCGTGCCCTGATGTCTGATGCTATGCGCTCAACTGTGAAAAATCTCGCAAAGTGTTTCCCAACAGCAATCATTAGTGGAAGAAGCCGTGACAAGGTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGGAATGGACATCATGGGCCCAGCCAGATACACAGCCTGCAATGACCATTCAAATTGTATTAAATCCTCGGATGAGCAGGGTAAGGAGGTGAATCTGTTCCAGCCTGCCAGTGAATTTTTACCTATGATAGACGAGGTTTTTAGAGCCCTTGTCGAAACCACTAGAGGAATTGAAGGTGCAAAAGTTGAGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGAATAGTTGGTCTACTATTGCACAATATGTTCATGATGTTCTCAAAGATTATCCTCGTTTACGACTAACCCATGGCCGGAAGGTTTTAGAGGTCCGTCCTGTAATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTGGACTAACCAATAGTGAGGATGTGCTCCCAATTTATATTGGAGATGATAGAACTGACGAAGATGCATTCAAGGTGTTGCGAGAAGGAAATCGGGGTTATGGTATACTGGTGTCTCCAGTACCAAAAGAAACCAAGGCATTCTACTCCCTCAAGGACCCGTCAGAGGTCATGGAATTTCTCAAATCCCTAGTGAGATGGAAAGAGTTGGATGCACCTATTAATTCAGAAGGAAGAGGAGCATAG 1182 0.4323 MDLKSNHASPVLTDPAPVNKSRLGIPSGLLPYSQPGTGFSSGKYVIIPRKKPGKLDDVRSNGWLDAMKSSSPPRKKLIKDFNVEVATDDTDNVTSSWMLKYPSALNSFEKIISYAQSKKIAMFLDYDGTLSPIVDDPDRALMSDAMRSTVKNLAKCFPTAIISGRSRDKVYELVGLKELYYAGSHGMDIMGPARYTACNDHSNCIKSSDEQGKEVNLFQPASEFLPMIDEVFRALVETTRGIEGAKVENHKFCASVHYRNVDENSWSTIAQYVHDVLKDYPRLRLTHGRKVLEVRPVIDWNKGKAVEFLLESLGLTNSEDVLPIYIGDDRTDEDAFKVLREGNRGYGILVSPVPKETKAFYSLKDPSEVMEFLKSLVRWKELDAPINSEGRGA* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0568 393 Pfam Trehalose-phosphatase 123 367 IPR003337 GO:0003824|GO:0005992
Vvi2g0568 393 Gene3D - 203 297 - -
Vvi2g0568 393 Gene3D - 122 363 IPR023214 -
Vvi2g0568 393 FunFam Trehalose 6-phosphate phosphatase 221 297 - -
Vvi2g0568 393 FunFam Trehalose 6-phosphate phosphatase RA3 120 260 - -
Vvi2g0568 393 FunFam Trehalose 6-phosphate phosphatase 261 386 - -
Vvi2g0568 393 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 30 384 IPR044651 GO:0004805|GO:0005992
Vvi2g0568 393 NCBIfam HAD-IIB family hydrolase 122 340 IPR006379 -
Vvi2g0568 393 NCBIfam trehalose-phosphatase 117 378 IPR003337 GO:0003824|GO:0005992
Vvi2g0568 393 CDD HAD_TPP 121 371 - -
Vvi2g0568 393 SUPERFAMILY HAD-like 121 379 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0568 Vvi-Chr2 4898359 4900826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0568 107 376 Trehalose Biosynthesis Gene Families AT1G70290 27.431 5.49e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0568 K01087 - vvi:100852434 794.653