Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0564 ATGTCCTCCTCTTCAACCTTGTCGCTGGACCACCTCCCTCCTTCCGAGCAGCTCTGTTATGTCCATTGCAACATTTGCGACACCGTTCTCGCGGTGAGCGTTCCTTGCACCAGTCTGTTCAAGACCGTTACTGTTCGATGTGGACACTGCACCAACCTGTTGCCTGTAAACCTTCGTGGATTGCTTCTACCTTCAGCCAATCAGCTTCACCTGGGCCACGCCTTCTTCTCTCCTTCCCATAATCTTCTGGAAGAGATCCCAAATCCATCTCCGAACTTTTTGATCAATCAGACCACCGCAAATGACTTTTCTGTGTCAGCTAGAGGAGGAGCTGATGAACTTCCCAGACCCCCGGTGATTAACAGACCTCCGGAGAAGAGACAGAGAGTCCCGTCCGCGTACAACCGATTCATCAAGGACGAGATCCAACGCATCAAGGCGGGAAACCCTGATATAACTCACAGAGAAGCCTTCAGTGCAGCTGCAAAGAATTGGGCCCATTTCCCTCACATCCACTTTGGACTCATGCCTGATCAGACGATGAAGAAGACTAACGTGCGCCAACAGGAAGGAGAGGACGTTCTCATGAAAGATGGCTTCTTTGCTTCTGCCAATGTCGGTGTCTCTCCTTACTAG 636 0.5094 MSSSSTLSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNLRGLLLPSANQLHLGHAFFSPSHNLLEEIPNPSPNFLINQTTANDFSVSARGGADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVRQQEGEDVLMKDGFFASANVGVSPY* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0564 211 CDD HMG-box_SF 129 165 - -
Vvi2g0564 211 Gene3D High mobility group box domain 120 186 IPR036910 -
Vvi2g0564 211 FunFam Axial regulator YABBY 120 191 - -
Vvi2g0564 211 SUPERFAMILY HMG-box 119 168 IPR036910 -
Vvi2g0564 211 MobiDBLite consensus disorder prediction 107 127 - -
Vvi2g0564 211 PANTHER PROTEIN YABBY 6-RELATED 1 187 IPR006780 GO:0007275
Vvi2g0564 211 Pfam YABBY protein 14 175 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0564 Vvi-Chr2 4862199 4864424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0564 25 209 C2C2-YABBY Transcription Factor Family AT4G00180 59.330 1.64e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vvi2g0564 YABBY 7.7e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0564 K25796 - vvi:100267708 435.261