Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0559 ATGAATACCTTTTCACATGTTCCCCCCGGTTTTAGATTCCACCCCACGGATGAAGAACTTGTCGATTACTACCTTAGAAAAAAGGTTGCTTCGAGAAGGATTGATCTAGATGTCATTAAAGATGTCGATCTCTACAAAATTGAGCCATGGGATCTTCAAGAGTTATGCAAAATAGGCACTGAAGAGCAGAATGAGTGGTATTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGAACTAATAGAGCTACAAAAGCCGGATTCTGGAAAGCTACTGGAAGAGATAAGGCTATTTACTGTAAGCATAGCTTGATTGGCATGAGAAAGACTTTAGTCTTTTACAAAGGTCGAGCCCCAAATGGACAAAAGTCAGATTGGATCATGCATGAGTATCGACTGGAAACAAATGAAAACGGGACTCCTCAGGCAAAAGGATGGGTCGTTTGTAGGGTATTCAAGAAGAGAATGGCAACAATGCGGAAAGTGGGTGAACATGGGTCACCATGTTGGTATGATGACCAAGTTTCATTCATGCCAGATCTTGATTCCCCAAGGCGGATTTCTCAGCCCTACACTTCCTTCCAGCATCATTATTCCTGCAAACAAGAGCTCGAGTTGCCCTACAATATGCCTCATGACCCTTACCTCCAGCTTCCTCAGCTAGAAAGCCCCAAACTTCCACAGTCAGCTGCTAGCGTAAGCTGCAATTCGGTGGCTCCATATGGTTTTGATAGGCACAACGGAAGCACTTTGCAGTCCTCCACCCTCACACAAGAGGAGCATATACAGCAAAGCTATCAGCAAAACATGAGCTCTCTTTACAGCAGCAACAATGAGCAAGCAGTGGATCAGGTAACGGATTGGCGAGTCCTTGACAAATTTGTTGCATCTCAGCTAAGCCATGATCAAGACGCATCTAAGGAAACCAACTACTCCAATGCAGCTGTCCCTACTTTTCATGTTGCTGATCATATGAACTTGCTAGTGAATGATTCCAAAAGGCCAGAAATTCCTCAAGAATATGCTTCAACATCAACGTCCAGCTGCCAAATCGATCTGTGGAAGTGA 1074 0.4385 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASRRIDLDVIKDVDLYKIEPWDLQELCKIGTEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYCKHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPQAKGWVVCRVFKKRMATMRKVGEHGSPCWYDDQVSFMPDLDSPRRISQPYTSFQHHYSCKQELELPYNMPHDPYLQLPQLESPKLPQSAASVSCNSVAPYGFDRHNGSTLQSSTLTQEEHIQQSYQQNMSSLYSSNNEQAVDQVTDWRVLDKFVASQLSHDQDASKETNYSNAAVPTFHVADHMNLLVNDSKRPEIPQEYASTSTSSCQIDLWK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0559 357 FunFam NAC domain-containing protein 16 160 - -
Vvi2g0559 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 279 - -
Vvi2g0559 357 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Vvi2g0559 357 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Vvi2g0559 357 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Vvi2g0559 357 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0559 Vvi-Chr2 4836974 4839409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0559 1 357 NAC Transcription Factor Family AT1G12260 57.292 2.37e-146 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi2g0559 NAM 4.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0559 - - vvi:100242025 749.199