Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0558 ATGAGGAAAACGAAAGGGTTCAGGCTAGGAAGAAAGCTGGTCACGGTGTTCAGATGGGTTTTCAGGCGAAATCAAAGTCCGAGAGTTATCAAAAGTTTGGATCATCGGAGTTGTAGGAGTAGGGCCATGACCAAAATCTGCAACTGGGGTCGTCGTCTTCTGATGAAAGCTAAGGGGCTCTGTTTTCCCAAGTCGGGTTACGTTCGGGTGGGTCATGAGCCGTGCGAGACTAAACCGATGGAAGTACCCAAGGGCCACTTGGCTGTCTACGTCGGTGACTCCGGCGACCACACTCACCGTGTTCTAGTACCAGTGTTATACTTCAATCACCCACTGTTTGGGGAGTTGTTGAGAAACGCCGAGAAGGTTTACGGGTTCAACCATCCGGGCGGAATCACAATTCCCTGCCCTATAACAGAGTTCGAGAAGGTGAAAACAAGGATCGACGCCGGTGAGCATTTCCGGCGGTATAGATCAAAGCAACGGCATTGA 492 0.5081 MRKTKGFRLGRKLVTVFRWVFRRNQSPRVIKSLDHRSCRSRAMTKICNWGRRLLMKAKGLCFPKSGYVRVGHEPCETKPMEVPKGHLAVYVGDSGDHTHRVLVPVLYFNHPLFGELLRNAEKVYGFNHPGGITIPCPITEFEKVKTRIDAGEHFRRYRSKQRH* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0558 163 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 63 143 IPR003676 GO:0009733
Vvi2g0558 163 Pfam Auxin responsive protein 64 145 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0558 Vvi-Chr2 4822703 4823194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0558 79 141 Calmodulin-binding Proteins AT3G43120 47.619 3.20e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0558 K14488 - vvi:100255700 348.206