Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0555 ATGCTTAGACTTCGCAGCGTTTTGATTCTTTTGAAATTGAATACACTTCAATCTAAAAGATTTGAAGCCCTAAGTTCATTCAACAGTTTTCACCACGATTCCTCGAACCAATCACAATTCAATGTCGCAATTTTCTGGGATTTAGACAACAAACCCCCAAATTCATATCCACCGTACGATGCTGCCGTTAGACTGAAGGCGGTGGCCTCATCTTTCGGAGTAGTCCGCTACATGGTTGCCTATGCCAATCGCCATGCCTTCAGCTATGTCCCATCTGCAGTTAGGGAGCAAAGAAAAGAGAGAAAGCTATTGAATCATTTGGAGAATAGGGGTGTGGTTGCACGTGTTGAACCCTATCTATGTCGCGTATGTGGGAGGAGATTTTACAATAATGAGAAGCTTATCAATCATTTTAAGCAAATTCATGAGCGTGAGCAGGCAAAAAGGTTGAACCAGATTGAGTCAGCTAGAGGAAAAAGGAGGGTGAAGTTGGTGGGTAAATTTGCGATGAAGATGGACAAATATAGGAATGCAGCGAGGGACGTTTTGACGCCGAAAGTTGGGTATGGTTTAGGGGACGAGTTGAAACGAGCTGGGTATTGGGTTAGGATGGTTTCGGATAAGCCGCAGGCTGCCGATACTGCATTGAGGAACCACATTGTGGATATGATGGATAAGAGGAGGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCATAG 795 0.3862 MLRLRSVLILLKLNTLQSKRFEALSSFNSFHHDSSNQSQFNVAIFWDLDNKPPNSYPPYDAAVRLKAVASSFGVVRYMVAYANRHAFSYVPSAVREQRKERKLLNHLENRGVVARVEPYLCRVCGRRFYNNEKLINHFKQIHEREQAKRLNQIESARGKRRVKLVGKFAMKMDKYRNAARDVLTPKVGYGLGDELKRAGYWVRMVSDKPQAADTALRNHIVDMMDKRRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0555 264 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 26 229 - -
Vvi2g0555 264 Coils Coil 229 229 - -
Vvi2g0555 264 Gene3D Classic Zinc Finger 94 165 - -
Vvi2g0555 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 147 IPR013087 -
Vvi2g0555 264 ProSitePatterns Zinc finger C2H2 type domain signature. 121 142 IPR013087 -
Vvi2g0555 264 SUPERFAMILY beta-beta-alpha zinc fingers 118 144 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0555 Vvi-Chr2 4784126 4784920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0555 23 229 C2H2 Transcription Factor Family AT4G12240 65.714 2.49e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi2g0555 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0555 - - vvi:100261883 443.736