Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0550 ATGGGTTTCCTCTGTTTCCTCTATTTCCTCTTTTCTCTCCTCCTTTTTCTTGCATTTTCTGGTCTGCCAACCGTGTGGGGAAATTCAGAGCTGAGAGCTCTCATGGAGATGAAAGCTTCTCTGGACCCGGTGAACAGGTTCCTTTCTTCTTGGACCAGTGATGCAGACCCATGTAGTGGTTCGTTTGAAGGCGTCCACTGCAACGAACACCGGAAAGTGGCAAATATTACGTTGCAGGGAAAGGGACTTTCCGGCAAGGTACCGCCGGCGGTGGCTGGACTGAAATGCCTTTCTGGTCTTTACTTGCATTACAACTCGTTATCTGGTGAAATTCCCAGAGAAATCTCCAGCCTTACCGAATTGTCCGATCTATATCTTGATTTCAACAATCTCTCCGGCGCCATTCCTCCCGAGATTGGTAACATGGCTAGTCTTCAAGTTTTGCAGCTTTGCAGCAACCAGTTGACAGGGGCGATACCTTCAGAGATAGGTTTCCTGAAGAAGCTGAGTGTTGTTTCTTTGCAAAAAAATAACTTGACTGGCAAAATTCCTCCAAGCCTGGGAAACTTAGGCATGTTAAGAATGCTGAATTTGAGCTTCAATCGCCTCTCTGGAACAATTCCTGCAAACCTAGCGCAGGCCCCAGCATTGGAATTTCTAGATGTGAGGAACAATTCCCTGTGGGGAATAGTCCCTTCTGGCTTGAAGAAATTAAAGGAAGGGTTTCAACACGCAAACAACTCAGCTGGTTTATGTGGAGTTGGGTTTTCTTCATTGAGAGTTTGCAGTTATTGGGATGGTATGAATATCAACCAATCTGAAACGTTCCCAGCCACCAACACTGATTTCACTCCAACAATTTATCCTGTGTCTTCAAATTTCCGGCCTCATTGCAACCAAACCCACTGCCCAAATGTATCCAAATTCCCTCGAATAGTCCTCGTTTCTGGGGTTACTACAGTCACTGTCACATTGTCTGCGGTAGGACTTCTGACCTTTCTTTGCTATCGAAGGAGGAAACAGAAAATCGGAAGTTCATTTGATACTTCTGAGTGTCAGCTTAGTACTGACCGGAGTATAGACTGCCACAGGAAGATTGCCTCTCCACTTGTGAGTCTTGAGTACTCCACTGGATGGGATCCATTGGCTGATGGGCGAAATGGGAATGTATTTTCCCAGGAGTTTTGCCAAAACCCTAGGTTCAACTTGGACGAGATTGAGTCAGCAACCCAGTATTTTTCAGAGGTAAATTTGTTAGGGAAGAGCAAGTTCTGGTCCGTCTATAAAGGGATTCTAAGAGATGGTTCTCTGGTAGCAATTAGGAGCATTAGTGCCACCAGCTGCAAGTCTGAGGAAGCAGACTTCCTCAAGGGGTTGAACTTATTATCCTCATTGAGACATGAAAACCTTGTTAGGTTGAGAGGTTTTTGCTGCTCAAAGGGGAGGGGTGAATGTTATTTAATCCACGATTTTGTCCCAAATGGAAGCCTGTCACGGTATCTTGATTTGGAAGAAGGAAGCAGCCAGGTCCTCAACTGGTCCACAAGGGTCTCTATCATCCATGGCATTGCAAAAGGTATTGGATATCTACACAGCAGTGAAGAAAACAAACCTTCCCTAGTTCACAGAAGCATTTCTGCAGATAAAGTCCTTATCGACCAGCGGTTTAACCCGTTGATTTCTGATTCCGGCCTTCCTAAACTTCTTGCTGATGACATTGTCTTCTCAGCTCTGAAAACCAGTGCTGCATTAGGATACCTAGCTCCTGAGTACATTACCACTGGAAGTTTTACTGAGAAGAGTGATATATATGCATTCGGTGTGATCATCCTCCAGATTTTGTCAGGGAAGCAACAACTCACCAACTCAATGCGACTGGCAGCTGAATCTTGCAGATTTGCTGATTTTGTTGATACAAATCTCAAGGGGGAATTCTCTGAATCTGAAGCAGCCAAGCTGGCAAAGATTGGACTAGCTTGCACTCATGAGCTTCCTGACAATAGGCCAATTATGGAGACAGTGATTCAGGAGCTGAGCACTTGA 2043 0.4518 MGFLCFLYFLFSLLLFLAFSGLPTVWGNSELRALMEMKASLDPVNRFLSSWTSDADPCSGSFEGVHCNEHRKVANITLQGKGLSGKVPPAVAGLKCLSGLYLHYNSLSGEIPREISSLTELSDLYLDFNNLSGAIPPEIGNMASLQVLQLCSNQLTGAIPSEIGFLKKLSVVSLQKNNLTGKIPPSLGNLGMLRMLNLSFNRLSGTIPANLAQAPALEFLDVRNNSLWGIVPSGLKKLKEGFQHANNSAGLCGVGFSSLRVCSYWDGMNINQSETFPATNTDFTPTIYPVSSNFRPHCNQTHCPNVSKFPRIVLVSGVTTVTVTLSAVGLLTFLCYRRRKQKIGSSFDTSECQLSTDRSIDCHRKIASPLVSLEYSTGWDPLADGRNGNVFSQEFCQNPRFNLDEIESATQYFSEVNLLGKSKFWSVYKGILRDGSLVAIRSISATSCKSEEADFLKGLNLLSSLRHENLVRLRGFCCSKGRGECYLIHDFVPNGSLSRYLDLEEGSSQVLNWSTRVSIIHGIAKGIGYLHSSEENKPSLVHRSISADKVLIDQRFNPLISDSGLPKLLADDIVFSALKTSAALGYLAPEYITTGSFTEKSDIYAFGVIILQILSGKQQLTNSMRLAAESCRFADFVDTNLKGEFSESEAAKLAKIGLACTHELPDNRPIMETVIQELST* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0550 680 ProSiteProfiles Protein kinase domain profile. 413 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0550 680 Pfam Protein tyrosine and serine/threonine kinase 417 678 IPR001245 GO:0004672|GO:0006468
Vvi2g0550 680 FunFam Protein NSP-INTERACTING KINASE 2 27 176 - -
Vvi2g0550 680 FunFam Protein NSP-INTERACTING KINASE 2 384 491 - -
Vvi2g0550 680 Gene3D Ribonuclease Inhibitor 27 177 IPR032675 -
Vvi2g0550 680 Gene3D Phosphorylase Kinase; domain 1 384 491 - -
Vvi2g0550 680 Gene3D Transferase(Phosphotransferase) domain 1 493 680 - -
Vvi2g0550 680 Gene3D Ribonuclease Inhibitor 178 247 IPR032675 -
Vvi2g0550 680 FunFam Protein NSP-INTERACTING KINASE 2 492 680 - -
Vvi2g0550 680 SUPERFAMILY L domain-like 29 238 - -
Vvi2g0550 680 SUPERFAMILY Protein kinase-like (PK-like) 389 678 IPR011009 -
Vvi2g0550 680 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Vvi2g0550 680 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 289 679 - -
Vvi2g0550 680 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0550 Vvi-Chr2 4752553 4755341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0550 13 526 Miscellaneous Gene Families AT4G22730 59.962 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vvi2g0550 PK_Tyr_Ser-Thr 4.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0550 - - vvi:100244756 1308.12