Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0534 ATGGAAGGAAGAGAGGGTGCAAGTGGTGCTGGTGGTGGGGCAGTTACAGTGGTAGGATCAGATGCTCCGTCGGAATACCATGTGGCAGCTCGGACAGAAAATCCTAGTCCAGTGGCCGGATCATCGCCGGCGGTGACACCTGCAGTGGCCGTGCCTCAACCTGCTCCGGCGCCGGCGCCGGCGCCCGTGCCGGCGGCAGCGGTAGCGATGATGCCGGCTAAGAAGAAGAGGGGTAGACCAAGGAAATACGGACCAGACGGGACGGTGACGATGGCTCTGTCACCAAAGCCGATATCTTCTTCGGCTCCTGGACCGCCGGTGATCGACTTCTCAGTGGAGAAGCGTGGAAAAATACGGCCGGTGGGTTCAGCGAGCAAAAGTAAGATGGAGCTGGAGAATTTAGGTGAATGGGTTGCATGCTCTGTTGGTGCTAATTTCACACCTCATATCATCACCGTTAATTCTGGCGAGGACGTTACCATGAAGATTATATCATTTTCTCAACAAGGGCCTCGAGCAATATGCATTCTCTCTGCAAATGGAGTGATTTCTAGTGTCACACTTCGTCAGCCTGATTCTTCAGGGGGCACCTTGACATATGAGGGTCGCTTTGAGATACTCTCCTTGTCAGGATCATTCATGCCTAGCGATAGTGGAGGAACAAGGAGCAGATCTGGTGGGATGAGCGTTTCTCTAGCAAGTCCAGATGGGCGTGTTGTAGGGGGAGGTGTCGCTGGTCTGTTAGTAGCTGCCAGTCCTGTGCAAGTTGTGGTGGGCAGCTTTCTAACAGGGAACCAGCATGAGCAGAAACCCAAGAAACAGAAAATTGAACCTATATCAGCTGCCAGACCAACTGCAGCAGTTCCTATTTCTAGTTTAGAGATGGAGGAGCCCTTTGGTGGACATGGGCAGCGCCCTTCAGCTACCCCAAAACCAAATCTCTCATCCTCCACTTCATTCCGTGGAGACAACTGGTCTCCATTGCCATCAGATTCAAGGAATAAGGCAACTGACATTAATGTATCTTTGCCTGGAGGTTAA 1041 0.5235 MEGREGASGAGGGAVTVVGSDAPSEYHVAARTENPSPVAGSSPAVTPAVAVPQPAPAPAPAPVPAAAVAMMPAKKKRGRPRKYGPDGTVTMALSPKPISSSAPGPPVIDFSVEKRGKIRPVGSASKSKMELENLGEWVACSVGANFTPHIITVNSGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLTGNQHEQKPKKQKIEPISAARPTAAVPISSLEMEEPFGGHGQRPSATPKPNLSSSTSFRGDNWSPLPSDSRNKATDINVSLPGG* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0534 346 MobiDBLite consensus disorder prediction 265 346 - -
Vvi2g0534 346 Gene3D - 148 280 - -
Vvi2g0534 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 319 IPR039605 GO:0003680
Vvi2g0534 346 ProSiteProfiles PPC domain profile profile. 143 282 IPR005175 -
Vvi2g0534 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
Vvi2g0534 346 CDD DUF296 147 238 IPR005175 -
Vvi2g0534 346 MobiDBLite consensus disorder prediction 308 339 - -
Vvi2g0534 346 FunFam AT-hook motif nuclear-localized protein 1-like 148 278 - -
Vvi2g0534 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 145 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0534 Vvi-Chr2 4609471 4616673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0534 13 343 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 60.907 2.43e-125 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0534 - - vvi:100244375 553.903