Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0531 ATGGATCCAGTAACAGCACATGGCCATTCTCTCCCACCTCCTTTCCATACTAGAGATCTCCATCTTCATCACCAGCAGCAGCATCAATTTCACCCTCAACAGCAGAATTCAGAAGATGAACAAAGCGGCAGCAGCGGCCTCAACCGAGGGCAGAAGCGAGATCGAGACGACAACAATGAGAATACAAACGGAGGCAGCGAGGGGAATGAAATGGTAGGACTCTCTGGGGATGGAGAGATCAGTAGAAGACCCCGGGGAAGACCCGCTGGATCCAAGAACAAGCCCAAGCCTCCGATCATCATTACTCGCGATAGCGCCAATGCTTTGCGCACCCATGTGATGGAGATTGCTGACGGGTGCGACATCGTGGAGAGCGTCGCCACCTTTGCCCGACGTCGTCAGAGAGGGGTTTGCATTATGAGTGGAACTGGCACTGTAACGAACGTTACTCTTCGGCAACCGGCCTCACCTGGTGCAATTGTCACCCTACACGGCCGTTTCGAGATCTTATCCTTATCCGGATCCTTTTTACCTCCTCCAGCTCCGCCTGCTGCCACGGGGTTGACCATTTACTTAGCTGGCGGCCAAGGGCAGGTGGTGGGTGGAAGCGTTGTGGGGCAACTACTGGCTTCGGGTCCAGTTGTGATTATGGCAGCGTCATTCAGCAACGCCGCCTATGAGCGGCTTCCCCTTGAAGAGGAAGACCCTGCTCTACCAATGCCAGGAGGTTCCCTAGGCTCTCCCGGAGGGGTTGGTCAGCATCAGCCACCACAGCAGCAACCGCAGCAGCCACAGCAACTTTTAGCAGATCCAAACGCACCTCTTTTTCATGGGTTACCACCCAACCTTCTCAACTCCATCCAATTACCAGCGGAGGCCTACTGGGCTACAGGCCGCCCTCCATACTAA 909 0.5512 MDPVTAHGHSLPPPFHTRDLHLHHQQQHQFHPQQQNSEDEQSGSSGLNRGQKRDRDDNNENTNGGSEGNEMVGLSGDGEISRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLSGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGQLLASGPVVIMAASFSNAAYERLPLEEEDPALPMPGGSLGSPGGVGQHQPPQQQPQQPQQLLADPNAPLFHGLPPNLLNSIQLPAEAYWATGRPPY* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0531 302 MobiDBLite consensus disorder prediction 1 101 - -
Vvi2g0531 302 MobiDBLite consensus disorder prediction 234 276 - -
Vvi2g0531 302 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 296 IPR014476 GO:0003680
Vvi2g0531 302 MobiDBLite consensus disorder prediction 27 48 - -
Vvi2g0531 302 Pfam Plants and Prokaryotes Conserved (PCC) domain 110 223 IPR005175 -
Vvi2g0531 302 MobiDBLite consensus disorder prediction 251 269 - -
Vvi2g0531 302 SUPERFAMILY AF0104/ALDC/Ptd012-like 106 241 - -
Vvi2g0531 302 ProSiteProfiles PPC domain profile profile. 106 242 IPR005175 -
Vvi2g0531 302 FunFam AT-hook motif nuclear-localized protein 109 236 - -
Vvi2g0531 302 CDD DUF296 110 193 IPR005175 -
Vvi2g0531 302 PIRSF ESCAROLA 16 302 IPR014476 GO:0003680
Vvi2g0531 302 Gene3D - 109 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0531 Vvi-Chr2 4564098 4565006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0531 1 302 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 60.411 2.99e-96 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0531 - - vvi:100265031 499.975