Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0529 ATGCAATCTCCATATGGCCATGAAATTCAACTTTCTCTGGAAACTAAGAGCGCATTTTGTGGACTTTCTTGGAGCTGTGTTGGCGGTGGCGATAAATCTGAGCCAAAGGTGCCTAACAGGTGCATGAGCTGCAACAAGAAGGTGGGGTTGACGGGGTTCAGATGCAAGTGCGGGAGTACCTTTTGCGGGGCTCATCGTTACCCAGAGAAGCACGAGTGCACATTCGATTTCAAGGCCTCAGGGCGTGACGCCATTGCCAAGGCTAATCCGGTGGTTAAGGCTGATAAACTGGACAGGCTGTGA 303 0.5116 MQSPYGHEIQLSLETKSAFCGLSWSCVGGGDKSEPKVPNRCMSCNKKVGLTGFRCKCGSTFCGAHRYPEKHECTFDFKASGRDAIAKANPVVKADKLDRL* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0529 100 PANTHER AN1-TYPE ZINC FINGER PROTEIN 31 99 - -
Vvi2g0529 100 Pfam AN1-like Zinc finger 41 77 IPR000058 GO:0008270
Vvi2g0529 100 ProSiteProfiles Zinc finger AN1-type profile. 35 81 IPR000058 GO:0008270
Vvi2g0529 100 FunFam Zinc finger AN1-type containing 6 26 96 - -
Vvi2g0529 100 Gene3D - 27 96 IPR035896 -
Vvi2g0529 100 SUPERFAMILY AN1-like Zinc finger 32 95 IPR035896 -
Vvi2g0529 100 SMART AN1_Zf_4 41 78 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0529 Vvi-Chr2 4535846 4538675 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0529 9 100 C2H2 Transcription Factor Family AT3G52800 48.913 7.95e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0529 - - vvi:100852756 162.925