Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0526 ATGGGTTCTGAGAACAAAACAAACGATGAAACAAGCTTTCAACCATCTGAGCCCATACTCTGCGCCAACGGGTGTGGTTTCTTCGGCGCCGCAGCAACGATGAACCTTTGCTCGAAGTGCTACAGGGACTTGCGCATTAAAGAAGAGCAACAGGCCTCTGCTAAAGCGGCCATGAATATGTCTTTCAACCCGAAACTGTTGCAGGAGAATCGAACGTCGTCGTTTTCCTTTTTGGATACAGCGGGCGGTTCTTCCTCCTCCTCTTCATGTTCTTTTACGTTCGGTAATGTAGGTGTTGGCGGTGGCGATAAATCTGAGCCAAAGGTGCCTAACAGGTGCATGAGCTGCAACAAGAAGGTGGGGTTGACGGGGTTCAGATGCAAGTGCGGGAGTACCTTTTGCGGGGCTCATCGTTACCCAGAGAAGCACGAGTGCACATTTGATTTCAAGGCCTCAGGGCGCGACGCCATTGCCAAGGCTAATCCGGTGGTTAAGGCTGATAAACTGGACAGGCTGTGA 519 0.5125 MGSENKTNDETSFQPSEPILCANGCGFFGAAATMNLCSKCYRDLRIKEEQQASAKAAMNMSFNPKLLQENRTSSFSFLDTAGGSSSSSSCSFTFGNVGVGGGDKSEPKVPNRCMSCNKKVGLTGFRCKCGSTFCGAHRYPEKHECTFDFKASGRDAIAKANPVVKADKLDRL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0526 172 SMART A20_3 18 42 IPR002653 GO:0003677|GO:0008270
Vvi2g0526 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Vvi2g0526 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Vvi2g0526 172 Gene3D - 6 64 - -
Vvi2g0526 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Vvi2g0526 172 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 7 64 - -
Vvi2g0526 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 17 171 - -
Vvi2g0526 172 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Vvi2g0526 172 FunFam Zinc finger AN1-type containing 6 85 168 - -
Vvi2g0526 172 Gene3D - 85 168 IPR035896 -
Vvi2g0526 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 63 - -
Vvi2g0526 172 Pfam A20-like zinc finger 19 42 IPR002653 GO:0003677|GO:0008270
Vvi2g0526 172 SUPERFAMILY AN1-like Zinc finger 104 167 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0526 Vvi-Chr2 4510366 4510884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0526 15 172 C2H2 Transcription Factor Family AT3G52800 42.857 6.86e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0526 - - vvi:100259845 342.043