Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0513 ATGATGATGGACTCCCATAACCCACCTTCCAAGATTGCCCGCCTTTCAGGGTCACCTCCAATTGGGTTGGGTCTTGAACTTGGACGTGGATCTGGGGATATGCTTGGCTGCACAAAGTCCTGTGGGTTCACGTTTCTCCAGTTGCAGGAACTGGAGCACCAGGCTCTCATCTACAAATACATGGAAGCGGGGCTTCCAGTGCCTTATCATCTAGTTTATCCGATATGGAAGAGTGTAGCTTGCTCTCTCGTGGGTCTCACTGCTGGGGCGTATCAACACCACCCTGGCTTTCTGGGTTTGAGTCCTTTGTATTTGGACTATAAAAACAGCATGGATCCAGAGCCAGGGAGATGTAGAAGAACGGATGGGAAGAAATGGAGGTGTAGCAAAGAAGCAGTCCCGGATCAGAAGTACTGTGAGCGGCACATGCACAGAGGCCGTCAGCGTTCAAGAAAGCATGTGGAAGCTTCCCAACTTGGCGCTAGGACAGCTACTTCTGCTCTTAATAACACAGTCAGAGATGCTGTCACCTCAAACACAAATCTCTCAATTTCACTCCCAGTGAGCAGCACCACAAATGACATCTCCCCCAAGAGTGTTCTTCAACTGGGTGCTCAGAAAACTGAACCCTCTTAG 636 0.4984 MMMDSHNPPSKIARLSGSPPIGLGLELGRGSGDMLGCTKSCGFTFLQLQELEHQALIYKYMEAGLPVPYHLVYPIWKSVACSLVGLTAGAYQHHPGFLGLSPLYLDYKNSMDPEPGRCRRTDGKKWRCSKEAVPDQKYCERHMHRGRQRSRKHVEASQLGARTATSALNNTVRDAVTSNTNLSISLPVSSTTNDISPKSVLQLGAQKTEPS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0513 211 Pfam WRC 113 155 IPR014977 -
Vvi2g0513 211 ProSiteProfiles WRC domain profile. 112 156 IPR014977 -
Vvi2g0513 211 SMART QLQ_2 41 77 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi2g0513 211 Pfam QLQ 43 76 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi2g0513 211 ProSiteProfiles QLQ domain profile. 42 77 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi2g0513 211 MobiDBLite consensus disorder prediction 184 211 - -
Vvi2g0513 211 PANTHER GROWTH-REGULATING FACTOR 5 31 189 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0513 Vvi-Chr2 4421651 4422503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0513 43 211 GRF Transcription Factor Family AT4G37740 46.552 5.87e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vvi2g0513 WRC 5.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0513 - - vvi:100261588 437.187