Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0490 ATGGCTTCTTCCCTTCACTCATGGGGCTGCAGGTTCCTCTTCATGGGATTGGTATTCACAATCATTGCCAAATCAACCCTCGCTGTTGCACCTGTCTTCAGGCCAAGCCGATGGGCACTTGCGCATGCCACCTTTTATGGCGACGACACCGCCTCCGAGACCATGGGAGGAGCATGTGGCTATGGAAACTTGTTCCTTAACGGTTACGGGACAGACACAGTGGCTTTGAGCTCCACACTGTTTAACAATGGATATTCTTGTGGGAGTTGTTACCAGATCAAGTGTGTTCAGTCAAGTGCATGCTATAAAGGGTCCCCATACACCACAGTCACTGCTACAAACCTTTGCCCACCTAATTGGGCCCAGGACTCCAATGCCGGTGGCTGGTGCAACCCACCACGGGTCCATTTCGACATGTCCAAGCCCGCCTTCATGAAAATTGCTCAGTGGAAGGCTGGCATTATCCCAGTCATGTACCGCAGAGTACCATGTGTTAAGCGTGGCGGGCTTCAATTTTCTTTCCAAGGGAACGGATACTGGCTGTTGGTATATGTGATGAATGTTGGTGGAGGAGGAGATATCGCGAGCATGTGGGTGAAGGGAAGCAAAACAGGGTGGATTAGTATGAGCCACAACTGGGGGGCCTCATACCAGGCGTTTGCAACTCTGAAAGGCCAAGCTCTTTCTTTTAAGCTCATCTCCTACTCAACCAAGCAGATTCTAGTAGCAAACAATGTGGCTCCCTCTAACTGGAATGTAGGAATGACTTACAAGGCCAATGTGAACTTCCATTGA 795 0.5006 MASSLHSWGCRFLFMGLVFTIIAKSTLAVAPVFRPSRWALAHATFYGDDTASETMGGACGYGNLFLNGYGTDTVALSSTLFNNGYSCGSCYQIKCVQSSACYKGSPYTTVTATNLCPPNWAQDSNAGGWCNPPRVHFDMSKPAFMKIAQWKAGIIPVMYRRVPCVKRGGLQFSFQGNGYWLLVYVMNVGGGGDIASMWVKGSKTGWISMSHNWGASYQAFATLKGQALSFKLISYSTKQILVANNVAPSNWNVGMTYKANVNFH* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0490 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
Vvi2g0490 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Vvi2g0490 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Vvi2g0490 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Vvi2g0490 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Vvi2g0490 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Vvi2g0490 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Vvi2g0490 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Vvi2g0490 264 Gene3D - 170 264 IPR036749 -
Vvi2g0490 264 SMART dpbb_1 73 159 IPR007112 -
Vvi2g0490 264 Gene3D - 24 164 IPR036908 -
Vvi2g0490 264 CDD DPBB_EXPA_N 37 164 - -
Vvi2g0490 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Vvi2g0490 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Vvi2g0490 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Vvi2g0490 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Vvi2g0490 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Vvi2g0490 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Vvi2g0490 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Vvi2g0490 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Vvi2g0490 264 PANTHER EXPANSIN-A15 25 259 IPR002963 GO:0009664
Vvi2g0490 264 Pfam Lytic transglycolase 73 159 IPR009009 -
Vvi2g0490 264 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Vvi2g0490 264 SUPERFAMILY Barwin-like endoglucanases 37 187 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0490 Vvi-Chr2 4249304 4250807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0490 14 264 Expansin Gene Family AT1G12560 66.932 3.01e-126 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0490 - - vvi:100266697 562.762