Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0486 ATGGTGAGGGGAAAAACTCAGATGAAGAGGATAGAGAATGCAGCGAGTAGGCAAGTGACCTTCTCAAAGAGGAGGAGTGGGCTATTGAAGAAGGCCTTTGAGCTGTCAGTGCTTTGTGATGCTGAAGTTGCACTCATCATCTTCTCTCCAAGAGGAAAGGTCTTTGAGTTCTCTAGTTCCAGTATTAACAAGACAATAGAACGCTACCAAAGTAAAGCCAAGGGCCTAGGAATCAGCAAGAGAGGAGCTCCAGAAAATGAGCAGCATCACTTGGAGGGAGAAACTGTTGACCTGGCAAAGAAGATTGAGCTCCTCGAAGTTTCTAAACGAAGACTATTAGGCGAATGTTTGGACTCATGTTCAATAGAAGAGCTACAACAGATAGAGAATGAATTGGAGCAAAGCTTAAGCAACATTAGGATACAAAAGAATCATTTATGCAAGGGGCACATTGAGCGGCTGAAGGAGCAGGAAAGAATTCTAGGAGAAGAAAATGCAAAGTTACGAGGAAAGTGTGGGTTGCAGCCACTGCAACCATCCACCAAACATCAGTCAGTACCATATGTAGAAATATCGGAGGTAGAGACAGAATTGTTCATAGGACCACCAGAAAGACGAACAGTCCGTTATCTGTCAGAGACCTGA 645 0.4403 MVRGKTQMKRIENAASRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKVFEFSSSSINKTIERYQSKAKGLGISKRGAPENEQHHLEGETVDLAKKIELLEVSKRRLLGECLDSCSIEELQQIENELEQSLSNIRIQKNHLCKGHIERLKEQERILGEENAKLRGKCGLQPLQPSTKHQSVPYVEISEVETELFIGPPERRTVRYLSET* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0486 214 Coils Coil 122 145 - -
Vvi2g0486 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi2g0486 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi2g0486 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi2g0486 214 SUPERFAMILY SRF-like 3 72 IPR036879 GO:0003677|GO:0046983
Vvi2g0486 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Vvi2g0486 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi2g0486 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi2g0486 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi2g0486 214 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Vvi2g0486 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi2g0486 214 Coils Coil 151 171 - -
Vvi2g0486 214 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Vvi2g0486 214 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi2g0486 214 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi2g0486 214 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0486 Vvi-Chr2 4197807 4208721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0486 1 206 MADS-box Gene Family AT4G22950 59.906 5.06e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi2g0486 K-box 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0486 - - vvi:100246102 414.075