Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0484 ATGGAACCGGGTTTGGGAATGATGGGTGGTGGCGGAATTGGTGGTTTGAGCGACGGTGATCAGCAGCAGCGCCAGCTCAAGGGGGAGATCGTCACACACCCACTATATGAGCAGCTACTTGCAGCTCATGTAGCGTGTCTCCGTGTGGCCACGCCGATCGATCAGTTGCCGCTGATCGACGCGCAGCTGACGCAGTCCCATCACCTCCTCCGCTCCTACGCATCGCAGCAGCACCACCACGGCAACTCCCTCTCACCCCATGAGAGGCAAGAGCTCGACAACTTCTTGTCGCAATATTTATTAGTTTTGTGTACTTTCAAAGAACAGCTTCAACAACATGTCAGAGTCCATGCTGTTGAAGCTGTCATGGCCTGCCGTGAGATAGAACAAACCTTACAAGCCCTCACTGGGGTGAGTCTGGGTGAGGGGAGTGGTGCAACCATGTCTGACGATGAGGAGGAGATGCAGATGGATTTTTCATTAGATCAAGGAGGGGGTGACGGGCATGACATGATGGGGTTTGGTCCACTGCTTCCAACTGAATCTGAAAGGACTCTCATGGAGAGAGTACGGCAAGAACTGAAGATTGAACTCAAGCAGGGATTCAAATCAAGAATCGAGGATGTGAGAGAGGAAATTCTCAGAAAAAGAAGGGCAGGGAAACTACCAGGAGACACAACCTCCGTGTTGAAAAACTGGTGGCAGCAACACTCAAAGTGGCCATACCCAACTGAAGACGACAAGGCAAAACTAGTGGAGGAGACGGGGTTGCAGCTAAAGCAAATCAACAATTGGTTCATCAACCAAAGGAAGCGCAATTGGCACAGTAATTCTCAGTCGGTGACCGCCTTAAAGTCGAAGCGCAAGAGGTAG 873 0.5132 MEPGLGMMGGGGIGGLSDGDQQQRQLKGEIVTHPLYEQLLAAHVACLRVATPIDQLPLIDAQLTQSHHLLRSYASQQHHHGNSLSPHERQELDNFLSQYLLVLCTFKEQLQQHVRVHAVEAVMACREIEQTLQALTGVSLGEGSGATMSDDEEEMQMDFSLDQGGGDGHDMMGFGPLLPTESERTLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTALKSKRKR* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0484 290 MobiDBLite consensus disorder prediction 1 20 - -
Vvi2g0484 290 Pfam Homeobox KN domain 233 272 IPR008422 GO:0003677|GO:0006355
Vvi2g0484 290 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 71 276 - -
Vvi2g0484 290 FunFam homeobox protein knotted-1-like 3 isoform X1 214 275 - -
Vvi2g0484 290 Pfam KNOX1 domain 26 67 IPR005540 GO:0003677|GO:0005634
Vvi2g0484 290 SMART HOX_1 215 280 IPR001356 GO:0003677
Vvi2g0484 290 ProSiteProfiles ELK domain profile. 193 213 IPR005539 GO:0003677
Vvi2g0484 290 Pfam KNOX2 domain 85 136 IPR005541 GO:0003677|GO:0005634
Vvi2g0484 290 ProSiteProfiles 'Homeobox' domain profile. 213 276 IPR001356 GO:0003677
Vvi2g0484 290 SMART KNOX1_2 24 68 IPR005540 GO:0003677|GO:0005634
Vvi2g0484 290 CDD homeodomain 216 277 IPR001356 GO:0003677
Vvi2g0484 290 SMART KNOX2_2 82 137 IPR005541 GO:0003677|GO:0005634
Vvi2g0484 290 SUPERFAMILY Homeodomain-like 215 279 IPR009057 -
Vvi2g0484 290 Gene3D - 212 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0484 Vvi-Chr2 4164577 4171991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0484 2 289 Homeobox Transcription Factor Family AT1G62990 77.966 8.62e-170 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vvi2g0484 KNOX2 2.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0484 - - vvi:100259923 560.451