Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0483 ATGGCTGAATCAGCATATGTCAATTCAGCGCCTTCTGATGGCTATAGTCAGGGTCAAGAAATTGTGCCATTTCCTACCGCTAAGGGCTCATTGAAATTTTTTCTTCTACATGGGAATCTAGATATTTGGGTCAAGGAGGCCAAAACCCTTCCTAACATGGACATGTTTCATAGATCTCTATCAGACATGTTTGGCAGATTCTCAGTGAAATCTGCCCCAACAATTGAAGGGCACAAGCCTCATAAGATAACCAGTGATCCGTATGTCACAATTTCTGTAAGTGGGGCTGTGATTGGGAGGACTTTTGTGATTAGTAATTCTGAAAACCCTGTTTGGATGCAGCATTTTTATGTTCCTGTTGCACATCATGCTGCAGAAGTGCACTTTGTTGTGAAAGACAGTGATGTTGTGGGCTCTCAGATTATAGGGGCTGTTGGCATCCCGGTGGAGCAGATATACTCGGGTTCAAAAGTTGAAGGAACTTTTCAAATCCTTAATGGGAGTGGGAAGCCCCGTAAGCCTGGAGCTGTCTTGACTCTATCAATCCAGTACACACCAATAGAAAAGGTGACCCTTTACCAATTTGGTGTAGGGTCAGGTCCTGAATACACTGGGGTCCCTGGTACATACTTTCCCCTTAGAACCGGCAGCAAAGTCACACTTTATCAAGATGCCCATGTCCATGATGGCTGCCTTCCAAATTTGAAGCTTGATAATGATGTCCAGTTTGAGCATGGGAAATGTTGGCATGACATCTTTCAAGCAATAAGTCAGGCTCGTCGTCTGATCTACATCACGGGATGGTCTGTGTATCACAGTGTTAGACTGATACGAGATACTGATAATTCAACAGAATTCATGTTGGGGCACCTTCTGAAGACCAAGTCCCAGGAAGGTGTTAGAGTGCTGCTCCTTGTATGGGATGATCCTACTTCTCGAAGCATTCTGGGTTATAAAACAGATGGGATCATGCAAACATATGATGAGGAGACTCGCAGGTTTTTCAAGCACTCTTCTGTGCAGGTGCTACTTTGCCCTCGATCTGCTGGAAAAGGACATAGCTGGATCAAACAACAGGAAGTTGGGACAATCTATACCCATCATCAGAAGACTGTGATTGTGGATGCTGATGCAGGTCATTATAAAAGAAAGATTATTGCTTTCATTGGAGGTCTCGATTTATGTGCAGGGCGATATGATACTCCGCAGCATCATATTTTTAAAACATTACAAACAGTTCATCAAGATGACTACCATAATCCTAATTTCACGGGGCCTACTACTGGATGTCCACGAGAACCCTGGCATGATATGCACTGTAGAATTGATGGTCCTGCAGCATATGATATCCTCACCAATTTTGAGGAGCGCTGGTTAAAGGCTTCTAAACCCCGTGGACTTCAAAAGCTGAAAGCATCATCATATGATGATGCTTTACTCAAGCTTGAGAGAATTTCCGACATCATTGGGATGGCAGATGCCTCCTGCCCAAATGAAAACGATCCAGAAGCTTGGCATGTCCAGGTCTTCCGTTCGATTGACTCCACTTCTGTGGAAGGCTTTCCTAAGGAACCAAAGGAAGCTACAAGCAAGAACCTGGTTTGTGGGAAAAATATACTGATAGACATGAGTATACATACAGCATATGTCAAGGCTATTCGTGCTGCTCAGCATTTCATTTATATTGAGAACCAGTACTTCCTCGGGTCATCTTATAATTGGGCTTCTTACAAAGACTTAGGTGCAAACAATTTAATACCTATGGAAATTGCTCTCAAAATCGCTAACAAAATCAGAGCAAAAGAGAGGTTTTCTGCATATATTGTTATCCCAATGTGGCCAGAGGGCGTTCCTACAAGTACTCCTACACAGAGGATTCTTTTTTGGCAGCACAAAACAATGCAAATGATGTATGAAATGGTTTACAAGGCACTGCAAGAGGTTGGGCTTGAGAACCAATATCATCCACAAGACTATTTAAATTTCTTCTGCCTGGGGAATCGCGAGGAAGGAGTTGACACCTCAAATGCAGGAAATCAATCCGCAGCAAACACCCCTCAAGCACTTGCTCGTAAAAGCAGACGCTTCATGATTTATGTCCATTCAAAAGGAATGATAGTGGATGATGAATACTTGATAATAGGGTCTGCAAACATCAATCAACGTTCCATGGAAGGAACCAGAGACACCGAAATTGCAATGGGTGCCTATCAGCCTCATCATACATGGGCAAGAAAACAGTCTAGCCCACATGGTCAAATATATGGATATAGGATGTCACTATGGGCAGAGCACACTGGAGTACTGGAGGAATGTTTCAAGCAACCAGAAAGTGTTGAGTGTGTTAGACGGCTGAGGTCCTTGGGTGAGCTCAACTGGAGGCAGTTTGCAGCAGATCAAATAACAGAAATGAAGGGACACCTTCTGAAGTACCCTGTGGAAGTGGAGAGAACAGGGAAGGTGAGGCCTCTTCCTGGGTCTGAAACATTTCCAGATGTCGGTGGGAACATAGTGGGGACTTTTACAGCCATTCAAGAAAATCTCACCATATAA 2553 0.4367 MAESAYVNSAPSDGYSQGQEIVPFPTAKGSLKFFLLHGNLDIWVKEAKTLPNMDMFHRSLSDMFGRFSVKSAPTIEGHKPHKITSDPYVTISVSGAVIGRTFVISNSENPVWMQHFYVPVAHHAAEVHFVVKDSDVVGSQIIGAVGIPVEQIYSGSKVEGTFQILNGSGKPRKPGAVLTLSIQYTPIEKVTLYQFGVGSGPEYTGVPGTYFPLRTGSKVTLYQDAHVHDGCLPNLKLDNDVQFEHGKCWHDIFQAISQARRLIYITGWSVYHSVRLIRDTDNSTEFMLGHLLKTKSQEGVRVLLLVWDDPTSRSILGYKTDGIMQTYDEETRRFFKHSSVQVLLCPRSAGKGHSWIKQQEVGTIYTHHQKTVIVDADAGHYKRKIIAFIGGLDLCAGRYDTPQHHIFKTLQTVHQDDYHNPNFTGPTTGCPREPWHDMHCRIDGPAAYDILTNFEERWLKASKPRGLQKLKASSYDDALLKLERISDIIGMADASCPNENDPEAWHVQVFRSIDSTSVEGFPKEPKEATSKNLVCGKNILIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSYNWASYKDLGANNLIPMEIALKIANKIRAKERFSAYIVIPMWPEGVPTSTPTQRILFWQHKTMQMMYEMVYKALQEVGLENQYHPQDYLNFFCLGNREEGVDTSNAGNQSAANTPQALARKSRRFMIYVHSKGMIVDDEYLIIGSANINQRSMEGTRDTEIAMGAYQPHHTWARKQSSPHGQIYGYRMSLWAEHTGVLEECFKQPESVECVRRLRSLGELNWRQFAADQITEMKGHLLKYPVEVERTGKVRPLPGSETFPDVGGNIVGTFTAIQENLTI* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0483 850 SUPERFAMILY Phospholipase D/nuclease 206 464 - -
Vvi2g0483 850 Gene3D Endonuclease Chain A 236 485 - -
Vvi2g0483 850 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 696 723 IPR001736 GO:0003824
Vvi2g0483 850 FunFam Phospholipase D delta 33 180 - -
Vvi2g0483 850 SMART pld_4 696 723 IPR001736 GO:0003824
Vvi2g0483 850 SMART pld_4 363 398 IPR001736 GO:0003824
Vvi2g0483 850 Pfam Phospholipase D C terminal 770 840 IPR024632 -
Vvi2g0483 850 Pfam Phospholipase D Active site motif 364 398 IPR001736 GO:0003824
Vvi2g0483 850 Pfam Phospholipase D Active site motif 697 723 IPR001736 GO:0003824
Vvi2g0483 850 FunFam Phospholipase D delta 239 478 - -
Vvi2g0483 850 FunFam Phospholipase D 512 742 - -
Vvi2g0483 850 Pfam C2 domain 38 164 IPR000008 -
Vvi2g0483 850 PANTHER PHOSPHOLIPASE D 30 839 IPR015679 -
Vvi2g0483 850 Gene3D Endonuclease Chain A 508 749 - -
Vvi2g0483 850 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 187 IPR035892 -
Vvi2g0483 850 ProSiteProfiles C2 domain profile. 16 162 IPR000008 -
Vvi2g0483 850 PIRSF PLD_plant 25 850 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi2g0483 850 SMART C2_3c 39 161 IPR000008 -
Vvi2g0483 850 SUPERFAMILY Phospholipase D/nuclease 532 782 - -
Vvi2g0483 850 CDD C2_plant_PLD 34 185 - -
Vvi2g0483 850 Gene3D C2 domain 34 173 IPR035892 -
Vvi2g0483 850 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 363 398 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0483 Vvi-Chr2 4153533 4161632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0483 27 850 Phospholipase D Gene Family (Wang group) AT2G42010 74.061 0.0 1353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0483 K01115 - vvi:100252995 1741.47