Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0480 ATGGCGTCGTTGCAGGAACACGAGATCGATCAAGACGACGAAGTTGGAACCTCTGATCTCAGCAGCAGTGCCGGAGAGCCTGAAGAGGAGAACAACGCCAACGATAATGGGATGTCGAAGCCTTCGTCTTCCGATCAAACGACGACGTTTCAGGCTTTGTCGATGAAGGAAGAGCCGGTGGATTCGGAACCAGATGCGGAGCAGAAGCCACAGGCGCCATCGATTGGGGTGGTGCCGGTCATTCAGATGCAGATGCCAATGCCGATTCCGATGCCCATGCCGGTATCGTCGGGACGGCGTTCTTCTACAAAGGACCGCCACACCAAGGTGGAGGGTCGTGGTCGGAGAATCCGGATTCCGGCCACTTGTGCTGCCAGGATCTTTCAGCTGACCCGGGAACTGGGTCACAAGTCTGATGGTGAGACCGTGCGGTGGTTGCTCGAACACGCTGAGCAGGCTATCATCGAAGCTACAGGAACCGGCACTGTCCCTGCTATTGCAGTTTCCGTCGGCGGAACCCTCAAGATTCCTACTTCGTCGTCATCGAACCCAGAAGGAGAGGCTCCAAAGAAAAGAAAGCGGCCGGCGAACAGTGAGTTTTATGACGTAAACGATGGTGTTTCAGTGTCGTCGGGTCTTGCCCCGGTCGGAGCCACCGCTGTGGCGGCAGCGGCCCCACAAGGACTCGTACCCATATGGGCCGTCGGAAACGCCGGAATGATGATCCCACCCAACGCTGTCGCAGCTGGCACGTTCTGGATGATCCCACCGACCGCAACCCCCGTCGCGGGACCCCCAAACCAGCCACAACTCTGGACGATTTCACCCTCAGTAAGCCCCGTTTTCAATATGTCTGCCCGACCCATTTCTTCATTCGTATCAGCGACTCAGCCTGGAATGAATCATCCGCCAGCTCTCGACGTCCGAGCTCCGCCGGTGCTCTGCAACAGCGCAACGATCTCAGCAACCACCAGCACCGCCGGAGCAAGAGCGGCGAAGAAGTCGACCATGGCTCCGTGTGTAAGTTCAACAACAACTACAACGAATACCAGTGCTACTAAACCCCAAATGCTGAGAGACTTCTCTCTGGAAATTTATGATAAAAAGGAGCTACAGTTCATGGGTAGGTCCGGTAATCAACAAACACAATCTTCCAAAATATTTGTGCTGCCTTGCAATATACACCACAGTTCTACCATCAAGCCCATTTTTTCTGTCTATTTCATAGTATTATGA 1236 0.5445 MASLQEHEIDQDDEVGTSDLSSSAGEPEEENNANDNGMSKPSSSDQTTTFQALSMKEEPVDSEPDAEQKPQAPSIGVVPVIQMQMPMPIPMPMPVSSGRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVGGTLKIPTSSSSNPEGEAPKKRKRPANSEFYDVNDGVSVSSGLAPVGATAVAAAAPQGLVPIWAVGNAGMMIPPNAVAAGTFWMIPPTATPVAGPPNQPQLWTISPSVSPVFNMSARPISSFVSATQPGMNHPPALDVRAPPVLCNSATISATTSTAGARAAKKSTMAPCVSSTTTTTNTSATKPQMLRDFSLEIYDKKELQFMGRSGNQQTQSSKIFVLPCNIHHSSTIKPIFSVYFIVL* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0480 411 MobiDBLite consensus disorder prediction 174 199 - -
Vvi2g0480 411 MobiDBLite consensus disorder prediction 1 74 - -
Vvi2g0480 411 Pfam TCP family transcription factor 102 188 IPR017887 -
Vvi2g0480 411 ProSiteProfiles TCP domain profile. 103 157 IPR017887 -
Vvi2g0480 411 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 43 369 IPR005333 GO:0003700
Vvi2g0480 411 MobiDBLite consensus disorder prediction 16 55 - -
Vvi2g0480 411 MobiDBLite consensus disorder prediction 93 112 - -
Vvi2g0480 411 MobiDBLite consensus disorder prediction 333 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0480 Vvi-Chr2 4140127 4141512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0480 94 380 TCP Transcription Factor Family AT2G45680 47.937 3.90e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi2g0480 TCP 3.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0480 - - vvi:100249539 704.516