Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0472 ATGGACATAGCACAGATTGGAAAATCAAGCGAGCTTTCAACCTGGTCCTGCAACTGTTATAAGACCACGGGCTTGACTGAACCAATTTTGGAGTTGACCCAAGTCTCAAATTTGAAAGACCGATATGTTCTTGGAGAGCAATTGGGGTGTGGGCAGTTTGGTGTCATTAGAGCTTGCTCTGATAAGTTGACCGGTGAGATGTTGGCTTGCAAATCCATCGCCAAGGAGAGATTGACGACAAGTGATGATGTGTGCAGTGTCAAGCTTGAGATTGAAATAATGACGAGGTTATCTGGGCACCCAAATGTTGTAGATCTCAAGGCAGTTTATGAGGAAGAGGATTATGTGCATTTAGTGATGGAGTTATGTGCAGGTGGAGAGCTTTTTCACAGGCTTGAGAAGCAGGGGATGTTCTCTGAGTGTGAGGCTAGGGATATTTTTAGGCATCTGATGCAAGTTGTTATGTATTGTCATGACAAAGGTGTTGTTCACCGAGATTTGAAGCCGGAAAACATCCTCTTGGCCACAAAGTCTTCATCCTCGCCGATTAAATTGGCAGACTTTGGTCTTGCAACCTATATCAAACCTGGGCAGAGTTTGCATGGGACTGTAGGGAGTCCATTTTATATAGCTCCTGAGGTACTGGCTGGGGGTTATAATCAGGCTGCTGATGTGTGGAGTACCGGGGTTATCCTGTACATACTCCTTAGCGGCATGCCACCATTTTGGGGGAAAACCAAGTCAAGGATATTTGATGCTGTTAGGGCAGCAGATCTGTGGTTCCCTCCTAATCCATGGGATTATATATCTGCATCTGCCAAGGAGTTAATCACTGGAATGCTGTGTGTAGATCCTTCCAAGAGGCTCACTGCTGCACAGGTTCTCGCTCACTCCTGGATGAAGGATTTTGTGGAGTCAAGTCAAGAACCATACAAGCGTAAGGATCCAAGATCTGGGCAACTGGAACTGGGTGGCAGCTCTTTCTCTACTCCTTTGATTGCCAGGAATCAGGACTATAGCTTCAGTTATGAATCACCCATAACTAGTGATGGCCAAATGGGAACTTCACCTGCATTTACATGCAGATCATCATTTTCTACTTTCCTGGTTGACAACAATGCACCTTGCTCAGTATCTGGAGGTTTTTCTTTTAGCAGCTGCTGTGAATCAGCTGCACGAGAATTCCCATCTCCAGTTCCCTCACTGCCAAGCTTTACCTTCTTCAGTCCAAGTTCTGAAATTGATAGAGGAAATCACCTGCCAGCGTATGAAGCCAACTTGTCAACCTTGGATGACACAAGTGGAGGTATGTGTTCTTTTGGTTCTAGCTCCATTTGTTTTGATTAA 1347 0.4521 MDIAQIGKSSELSTWSCNCYKTTGLTEPILELTQVSNLKDRYVLGEQLGCGQFGVIRACSDKLTGEMLACKSIAKERLTTSDDVCSVKLEIEIMTRLSGHPNVVDLKAVYEEEDYVHLVMELCAGGELFHRLEKQGMFSECEARDIFRHLMQVVMYCHDKGVVHRDLKPENILLATKSSSSPIKLADFGLATYIKPGQSLHGTVGSPFYIAPEVLAGGYNQAADVWSTGVILYILLSGMPPFWGKTKSRIFDAVRAADLWFPPNPWDYISASAKELITGMLCVDPSKRLTAAQVLAHSWMKDFVESSQEPYKRKDPRSGQLELGGSSFSTPLIARNQDYSFSYESPITSDGQMGTSPAFTCRSSFSTFLVDNNAPCSVSGGFSFSSCCESAAREFPSPVPSLPSFTFFSPSSEIDRGNHLPAYEANLSTLDDTSGGMCSFGSSSICFD* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0472 448 Gene3D Transferase(Phosphotransferase) domain 1 129 321 - -
Vvi2g0472 448 FunFam Phosphoenolpyruvate carboxylase kinase 129 316 - -
Vvi2g0472 448 ProSiteProfiles Protein kinase domain profile. 42 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0472 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Vvi2g0472 448 Pfam Protein kinase domain 42 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0472 448 SMART serkin_6 42 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0472 448 SUPERFAMILY Protein kinase-like (PK-like) 39 370 IPR011009 -
Vvi2g0472 448 ProSitePatterns Protein kinases ATP-binding region signature. 48 75 IPR017441 GO:0005524
Vvi2g0472 448 Gene3D Phosphorylase Kinase; domain 1 43 128 - -
Vvi2g0472 448 CDD STKc_CAMK 41 299 - -
Vvi2g0472 448 FunFam Calcium-dependent protein kinase 1 44 127 - -
Vvi2g0472 448 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0472 Vvi-Chr2 4022456 4024398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0472 35 310 EF-hand Containing Proteins AT5G19360 49.638 1.02e-96 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi2g0472 Pkinase 5.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0472 - - vvi:100244451 852.047