Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0466 ATGGACTTCTTCAATCAATTTTGTAATTCGTATCCATTTCCGTCGGATTCCCATTCTGTCAGCACGCCAGAGAGTTCTTCAGCGTCGGACTGGCAGACCCGGAGGACCATCCAATCCGACGAGGAAGTTCTGCTGGCGTCGGATCGGCCTAAGAAGCGCGCCGGTAGGAGGAAGTTTAAGGAGACACGGCACCCGGTGTACAGGGGAGTGAGGAGGAGGAACGGGAACAAGTGGGTGTGCGAGCTGCGGGAGCCCAATAAGAAGTCGAGAATATGGCTGGGGACGTATCCAACTGCTGAGATGGCTGCCCGGGCGCATGATGTTGCTGCATTAGCGTTTAGGGGCCGGAAGGCCTGTTTGAATTTTGCTGACTCTGCGTGGAGTTTGCCCGTGCCAGTTTCGAAGGACTCCATGGAGATTAGGAGGGCAGCAGCTGCAGCAGCAGAGGCGTTCCGGCCTCAGGAGTTTCAAGACCATTCAAGTGGAGACGCAAGGAAGGAAAGTGTGGAGGCTGCTGAATCAAGCATCAAGACCTCGGCCCAGAACCTCTTGTTAACGCGTGAAGAGTTGATTTTTGATACAGCAGGGTTGCTTATCACCATGGCTGAAGAGCCCCTACATTCTCCTCCTCCTTGTTTGGGGGACGGTTTCATGTGGGAGGATGTTGAACTTGACGCTGATATGTCACTATGGAGTTACTCAATTTGA 708 0.5339 MDFFNQFCNSYPFPSDSHSVSTPESSSASDWQTRRTIQSDEEVLLASDRPKKRAGRRKFKETRHPVYRGVRRRNGNKWVCELREPNKKSRIWLGTYPTAEMAARAHDVAALAFRGRKACLNFADSAWSLPVPVSKDSMEIRRAAAAAAEAFRPQEFQDHSSGDARKESVEAAESSIKTSAQNLLLTREELIFDTAGLLITMAEEPLHSPPPCLGDGFMWEDVELDADMSLWSYSI* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0466 235 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 233 IPR045277 GO:0003700
Vvi2g0466 235 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Vvi2g0466 235 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Vvi2g0466 235 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Vvi2g0466 235 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Vvi2g0466 235 MobiDBLite consensus disorder prediction 14 34 - -
Vvi2g0466 235 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700|GO:0006355
Vvi2g0466 235 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Vvi2g0466 235 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Vvi2g0466 235 MobiDBLite consensus disorder prediction 14 35 - -
Vvi2g0466 235 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
Vvi2g0466 235 FunFam Ethylene-responsive transcription factor 2 65 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0466 Vvi-Chr2 3928522 3929256 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0466 40 233 AP2-EREBP Transcription Factor Family AT1G63030 54.774 1.89e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi2g0466 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0466 - - vvi:100253072 461.07