Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0464 ATGGCGTCCGCCTCCGCCGGGGGCTCAGCCAAACAGCCCTCCCCTGGGAGACACCCAATGTATAGGGGAATCAGGAGTCGGAGTGGCAAATGGGTGTCTGAGATCAGGGAGCCACGTAAGACTACGCGGATATGGCTTGGGACGTTTCCGACCGCTGAGATGGCTGCTGCTGCCTATGATGTTGCCGCCTTAGCCTTAAAAGGGACAGAGGCGGTTCTCAACTTCCCGGACTTTGTTCACTCGTACCCGGTTCCGGCATCAGGGTCACCATCAGATATTCGTAGTGCAGCAGCTGCTGCTGCTGCGTTGAAGAAAGCGCAGACAGACGATGGCTCTGCAGCACACAGCAGGCGTGAAGATGATGGGAGGTTCGATGTTCATACTAATACTAATACTACGTCCGAGGGAGAATTTGTGGACGAGGAGGCATTATTTGATATGCCTAATTTGCTGGTGGATATGGCGGAGGGAATGCTGGTGACTCCGCCAAGAATAAACGTGCCATCCTCTCCCTACACGCCGGAGAATTATGATGGAGATAGTCTGTGGAGCTATTTTTAA 561 0.5348 MASASAGGSAKQPSPGRHPMYRGIRSRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALKGTEAVLNFPDFVHSYPVPASGSPSDIRSAAAAAAALKKAQTDDGSAAHSRREDDGRFDVHTNTNTTSEGEFVDEEALFDMPNLLVDMAEGMLVTPPRINVPSSPYTPENYDGDSLWSYF* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0464 186 Pfam AP2 domain 21 68 IPR001471 GO:0003700|GO:0006355
Vvi2g0464 186 Gene3D AP2/ERF domain 20 77 IPR036955 GO:0003700|GO:0006355
Vvi2g0464 186 MobiDBLite consensus disorder prediction 106 135 - -
Vvi2g0464 186 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Vvi2g0464 186 FunFam Ethylene-responsive transcription factor 2 19 77 - -
Vvi2g0464 186 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Vvi2g0464 186 CDD AP2 21 77 IPR001471 GO:0003700|GO:0006355
Vvi2g0464 186 MobiDBLite consensus disorder prediction 1 27 - -
Vvi2g0464 186 ProSiteProfiles AP2/ERF domain profile. 20 76 IPR001471 GO:0003700|GO:0006355
Vvi2g0464 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 156 - -
Vvi2g0464 186 MobiDBLite consensus disorder prediction 110 126 - -
Vvi2g0464 186 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vvi2g0464 186 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0464 Vvi-Chr2 3903205 3903765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0464 16 185 AP2-EREBP Transcription Factor Family AT5G52020 52.326 1.41e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi2g0464 AP2 1.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0464 - - vvi:100247951 361.688