LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g0459	ATGCTGCTAGGGATGGCTCTGGATGCCTACTTGGAGACCTACTTAGATTCCAATAGCCAATTGGCAGCACCTCTGGTGGGACCTGAGTGGGTGGCTGGAGGCATTCCAAGGTCCACCATCTCTAACAGCTTCTTCCAAAAAGATGATGGCAACTTGTTACTTTCTGGAGGTCCCCAATCGTGGAGAAGCGCTAGCACCAACATGGAGTCCTACCTTAGCTTACCCTCATCTCCTATGTCATTCTCATCACATAATCTAAGCATCTCAGGCTCTTCTGGTATTGATAGTTCCTCCACAATGGAACAGACATCTCCTCTAGACAAAAATTGCAGACAAGTGTGGAAAAGGCAGCAGCAGCAGCAACAGCAACTAGGAGTTGTTAATGCTACATCTCAGCCACCATCTCAAACACATTACCTTTCACTTCTTACTGGCATAAAACAGGAGCCTGATAATTCTACCCAGATGCCTAAAAAACCCAGACTAGAAGTCCAGGAAGAAGATTTTCTGCACCAGCAGATAATTCAACAACTGCTGCAGAGGAAGGACTCTTTGCAATTGCAAGGTCATAATCCGCACCTACAAGCCTGGATTCAGCAGCATAAAATGCGAAATCAGCAGCATCAAAAGATTTTGCAGTCTATTCAACAGTTGCAAGGCGTTGACATGCAACAACAGCAGCAACAAATGAGGAACCAGCTGCAACAGCAGGGTACACATGAAGTATCTGCCATGCGCCCCTCTGATTCTGGTATATGTTCTCGCCGACTAATGCAGTACATGTATCATCAGCGGCATCGACCACCTGACAATGCCATTTCCTACTGGAGGAAATTTGTAGCGGAGTATTATTCTCCTTGTGCCAAGAAAAGGTGGTGTTTATCTTTGTATGATAATGTTGGACATCATGCCAAAGGTGTTTTTCCTCAGTCAGCTATGGATACATGGCAGTGTGACATTTGTGGTTCTAGATCAGGGAGGGGATTTGAGGCAATTTTTGAAGTGCTTCCTCAGCTTATTAAAATAAACTTTGAGAGTGGTGTTATCGATGAGCTTTTGTTCGTAGATTTGCCTCATGAAAGTAGATTCTCTTCTGGATTAATGATGTTAGAATATGGAAAAGCAGTTCAGGAGAGTGTCTATGAGCAACTTCGCGTTGTTCGTGAGGGTCAACTTCGCATTATTTTCACTCATGATTTGAAGATACTGTCTTGGGAGTTTTGCACAAGGCATCATGAAGAACTTTTGCCTCGTCAGTTGGTTGCACCTCAGGTTAATCAGTTAGTTCATGCTGCCCAGAAGTATCAAACCACAATGAATGGAAGTAAATCTGATGGGTTTTGTGCACAAGATTTGCTAGTAAATTGCAATAGGTTTCTGAGAGCTGGGCATCAGCTTGCAAGAAATTTGGAGTTGCAGTTGGTAGATGAGTTGGGATTTTCAAAAAGATATGTTCGATGCTTGCAGATAGCTGAGGTCGTTGATAGTATGAAAGACTTGATGATTTTTGTGAGGGATAGCAACATTGGGCCAATCGAGAGCTTGAAAAATTATCCTCGGGAAGCAACCACAGTCAAGATTAAGAAAAAACAACTGCATCACGGGGAGCAGCCAGAGAGTGGTCAAGATTCCCCGAGCAACAGGGCTTCTAATTTGAGGGATATCTCCAGTGGGCTTATGACAGGCTCAGAAGAGGGAGCACTTGCACTGACCACTCGGTACCAGAAAATGATGCGACAAAGCTCCTTGAACTCAAATTCAAGCACAGTGAAACAGGAACCTTGTTTGTTCAACAGTTCTATCCCAGGTGCATCTTCTTTACCTGTTCAGCGCCCTAAATCCTCAAGTCCTGGACTCATCCAGATCCCCCCACCAGTTAATTCCTCCTCGAGTATCCATTCTTCTCAAGGCAGTCAAAATACGCAGCATTGCATGATCCAGAAGTTACTTCAGGAGATGATGAACAACAACAGAGCAAAAGGGTTACACAATTCAAATGGGGGTGAGGAAGAAGTCTTATGCGGCATTAATACAAGTACAATTGGTGGCTTACCTAAAAAGGCCAGGGGAACTAGTGTCGTTCGGAATGAGCTAGGTTGTAGAGACAGCACTGCAGCTGTGGCCTCCCCAGCAAATGTGTTGGGCAGTTTTGTCGGGAGGGACAAAAGCTTTAAAGCTGCGTCAAGCAGCAAGTCTTCTGGGACTAGTGAGAACAATGGCCTCGTAAAGAGGGAACCAGATTTGCCAGTGCCTGAAGCGGTCCAGGATGTGGCCCACGGGCTCTATGAGAATGATGTCTTCAATGCTGACCAGGAGAGCATGGAATATGGCTGGAAGGCATAA	2343	0.4507	MLLGMALDAYLETYLDSNSQLAAPLVGPEWVAGGIPRSTISNSFFQKDDGNLLLSGGPQSWRSASTNMESYLSLPSSPMSFSSHNLSISGSSGIDSSSTMEQTSPLDKNCRQVWKRQQQQQQQLGVVNATSQPPSQTHYLSLLTGIKQEPDNSTQMPKKPRLEVQEEDFLHQQIIQQLLQRKDSLQLQGHNPHLQAWIQQHKMRNQQHQKILQSIQQLQGVDMQQQQQQMRNQLQQQGTHEVSAMRPSDSGICSRRLMQYMYHQRHRPPDNAISYWRKFVAEYYSPCAKKRWCLSLYDNVGHHAKGVFPQSAMDTWQCDICGSRSGRGFEAIFEVLPQLIKINFESGVIDELLFVDLPHESRFSSGLMMLEYGKAVQESVYEQLRVVREGQLRIIFTHDLKILSWEFCTRHHEELLPRQLVAPQVNQLVHAAQKYQTTMNGSKSDGFCAQDLLVNCNRFLRAGHQLARNLELQLVDELGFSKRYVRCLQIAEVVDSMKDLMIFVRDSNIGPIESLKNYPREATTVKIKKKQLHHGEQPESGQDSPSNRASNLRDISSGLMTGSEEGALALTTRYQKMMRQSSLNSNSSTVKQEPCLFNSSIPGASSLPVQRPKSSSPGLIQIPPPVNSSSSIHSSQGSQNTQHCMIQKLLQEMMNNNRAKGLHNSNGGEEEVLCGINTSTIGGLPKKARGTSVVRNELGCRDSTAAVASPANVLGSFVGRDKSFKAASSSKSSGTSENNGLVKREPDLPVPEAVQDVAHGLYENDVFNADQESMEYGWKA*	781

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi2g0459	780	MobiDBLite	consensus disorder prediction	538	558	-	-
	Vvi2g0459	780	PANTHER	LIM DOMAIN-BINDING PROTEIN	48	765	IPR029005	-
	Vvi2g0459	780	MobiDBLite	consensus disorder prediction	726	748	-	-
	Vvi2g0459	780	MobiDBLite	consensus disorder prediction	726	740	-	-
	Vvi2g0459	780	Pfam	LIM-domain binding protein	256	516	IPR029005	-
	Vvi2g0459	780	MobiDBLite	consensus disorder prediction	579	641	-	-
	Vvi2g0459	780	MobiDBLite	consensus disorder prediction	527	558	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi2g0459	Vvi-Chr2	3857081	3867464	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi2g0459	249	520	C2H2 Transcription Factor Family	AT1G43850	58.456	2.31e-104	339

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g0459	-		-	vvi:100254797	1444.87