Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0454 ATGCCTCAAGGAACACTTGAAGTCCTTCTTGTCGGTGCCAAGGGTCTCGAGAACACTGATTTTCTCTGTAACATGGATCCTTATGTTGTTCTCACTTGCCGCACTCAGGAGCAGAAAAGCAGTGTTGCATCAGGAAAAGGATCTGACCCAGAATGGAATGAACATTTCGTATTCACCATATCTGAAGGCATCTCAGAACTCACCATTAAAATAATGGACAGTGATAGTGGTAGTGGTGATGATTTTGTGGGAGAAGCAACCATTCCACTAGAGGCACTCTTCACGGAAGGAAGCCTGGAGCCAGCACCGTACAATGTTGTTAAAGACCAGGAATATTGTGGAGAGATTAGAGTTGGCCTCACTTTCACTCAGAAGGGAGAATGTGATGGGGAGTCCTGTGCGCAGGAGGAAAACTATGGCGGATGGAAAGAGTCTTCTTATTGA 444 0.4572 MPQGTLEVLLVGAKGLENTDFLCNMDPYVVLTCRTQEQKSSVASGKGSDPEWNEHFVFTISEGISELTIKIMDSDSGSGDDFVGEATIPLEALFTEGSLEPAPYNVVKDQEYCGEIRVGLTFTQKGECDGESCAQEENYGGWKESSY* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0454 147 SMART C2_3c 5 102 IPR000008 -
Vvi2g0454 147 Pfam C2 domain 4 96 IPR000008 -
Vvi2g0454 147 PANTHER C2 DOMAIN-CONTAINING 1 139 - -
Vvi2g0454 147 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 125 IPR035892 -
Vvi2g0454 147 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Vvi2g0454 147 Gene3D C2 domain 2 124 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0454 Vvi-Chr2 3829912 3832266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0454 4 119 C2H2 Transcription Factor Family AT4G21160 28.448 1.81e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0454 - - vvi:100258133 293.123