Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0441 ATGATTGCAAAGGCCTTACCAGGCCGCATAGGCAAGCAATGCCGAGAAAGGTGGCACAACCATTTAGACCCAGCTATAAAGAAAGATGCATGGACCAAAGAAGAGGAGGCAATTCTTACGTACTATCATCAACTTTATGGGAACAAGTGGGCAGAAATAGCAAGGTTCCTGCCTGGAAGGAATGACAATGCAATAAAAAATCATTGGAATTGCTCAATAAAGAAGAAATCGGAGACCAAATTAGTTGCCCGTTCCACCTTGGATAAACATGGAGCTATCGTTCCTGATTCCCAAAATTGTGAAACAAATTCAAACAGCACGAAGGGCACAGCTGTCAAGCAGAATCACGGTGAAATAGTCTCTCTTCATCAGAAAGACGGGTCAGAGTATGCTGTTGGGACTTGTTTGACTGATTTGGTTCTTGGAAATGCTTATGGAGGAGAGAATTGTTTAGAACCAAAATCTGTTATCCCTTCAGGAGGGGATTTAAATCTGCCAAATGGATTTCAGTTTGATGGTAAAGATGCCACTGGTACTGCTGTTATTGGTGAACCATGCACAGACAATGACAATCATGCAAATATGTGTGAACCTTTGTCTATTCCCTTGGGTCTTCCTGGTTCTGTTAAAAAAAACTGTAATCCTTGTAATGCTCCTGAGGCTGTTGCTTCTCTCACTTCTAAGCGAAGACTGGAATCTCCTAAAAGGCCTTGGACTTATGATTTGAGTGTTACAGATTTGAGATTTAGTAGTGAAACAGGCGATTCCCTTTCTAGCCTCTCAGCATTTCGATTTGGTGATGATGATACCCAAGTTGGCAAGAAAAGCAAACTTAATTCAACACCTTTACAGTCAGAGCATATAAAGAATAGTTGGTTTTGTTATGAGCCAATACATTCGAAGGACTTGTTGGTTGCTTCAAAGAACGATTGTTTTCCAAGTACAGACAACCATACTAGGTATTCAAGCAGTCCATCGTGTGGTTTTACCACTCCCAAAGTTGCACAGAGTGTCTCTATTAACAGCAGGAGTCCAGAATCTATATTAAGGAGCTCAGCAATGAGTTTCAGAAATACTCCCTCTATTATAAGAAAGCGAACTTCCCGAAAATCTAGCAACAACTTTTCTGATTGCTCCACACCTGCACAAACAGTCCCATGTACTCAGAATGGTGAAGATATCAACAGCAGCAAAGCTTTTCCAAATGCAAAGCAGGGTTTGGTTGCTTCCCTCTGTAAACCCGAAGCTCCAGTTTCTGTGAAGACTCTGGGAAGATGCTTGGAATATGCGTTTGATATGGAATGGGATCCATCCAGAGTTAAATGTGGCACCTCAGTTTCTTCGACTGCAACTCCAGATGTTAATTTTAGTGCCAACAGAGTCTTGATACCTTAA 1395 0.4151 MIAKALPGRIGKQCRERWHNHLDPAIKKDAWTKEEEAILTYYHQLYGNKWAEIARFLPGRNDNAIKNHWNCSIKKKSETKLVARSTLDKHGAIVPDSQNCETNSNSTKGTAVKQNHGEIVSLHQKDGSEYAVGTCLTDLVLGNAYGGENCLEPKSVIPSGGDLNLPNGFQFDGKDATGTAVIGEPCTDNDNHANMCEPLSIPLGLPGSVKKNCNPCNAPEAVASLTSKRRLESPKRPWTYDLSVTDLRFSSETGDSLSSLSAFRFGDDDTQVGKKSKLNSTPLQSEHIKNSWFCYEPIHSKDLLVASKNDCFPSTDNHTRYSSSPSCGFTTPKVAQSVSINSRSPESILRSSAMSFRNTPSIIRKRTSRKSSNNFSDCSTPAQTVPCTQNGEDINSSKAFPNAKQGLVASLCKPEAPVSVKTLGRCLEYAFDMEWDPSRVKCGTSVSSTATPDVNFSANRVLIP* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0441 464 CDD SANT 30 70 IPR001005 -
Vvi2g0441 464 PANTHER MYB PROTEIN-RELATED 2 119 - -
Vvi2g0441 464 ProSiteProfiles Myb-like domain profile. 1 22 IPR001005 -
Vvi2g0441 464 Gene3D - 1 27 - -
Vvi2g0441 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 77 IPR017930 -
Vvi2g0441 464 Pfam Myb-like DNA-binding domain 28 70 IPR001005 -
Vvi2g0441 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 22 IPR017930 -
Vvi2g0441 464 SMART sant 27 75 IPR001005 -
Vvi2g0441 464 SUPERFAMILY Homeodomain-like 1 76 IPR009057 -
Vvi2g0441 464 Gene3D - 29 108 - -
Vvi2g0441 464 CDD SANT 2 22 IPR001005 -
Vvi2g0441 464 ProSiteProfiles Myb-like domain profile. 23 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0441 Vvi-Chr2 3738343 3740885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0441 1 82 MYB Transcription Factor Family AT5G02320 73.171 3.70e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi2g0441 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0441 - - vvi:100263258 952.584