Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0438 ATGCAGGCATTAGCCTCAACTCGATTGCTTCTTCTTGTTGGAGATTGTTTACCCGTAGGAAAGTTATTACATGTTTCTCGATTCCATGGAAGTGTACGTTTTCTGAGTCGGGTTGATCGTGAACATGGACCTCTTACTCTTGCAAGCCTTGGATTCAAAAGTGAATTTGAAACAACAAAGGGTAACAAAACAAAACCACTTCATCAACTGAATGCTGTGCCTGAAGTCTCCAAAAATAAAGTGAAGGCGGTCAGAAGCAATGAAATGAAGGCAGTTGGTACCAAAAAATCAATTGAAATAGAGGCAGCTCCATTTGCTGCAAAGTCATTTTCTGAGCTTGGTCTCCCTCCTTTATTGATTGACAGGTTAGAACGGGAAGGCTTCTCAGTTCCAACTGATGTTCAATCTGCAGCAATTCCCACAATTCTTAAGAATCATGATGTTGTGATTCAGTCTTATACTGGCTCAGGGAAAACATTGGCTTATCTCCTTCCTATACTGTCTGAAGTGGGACCACTGAAGAACAAACCTCCCAATGCTGACAACACATCTAGGAATAAAATGGAGATAGAAGCAGTGATTTTGGCTCCCTCTAGGGAGCTGGGGATGCAAATTGTGAGGGAGGTTGAGAAGCTGTTAGGACCAGCAGACAAAAAACTCGTTCAGCAGCTTGTAGGGGGTGCAAACCGAACAAGGCAGGAAGAAGCTCTCAAGAAAAACAAGCCATCCATTGTCGTTGGGACACCTGGACGAATTGCAGAGATGAGTGCATCGGGGAAACTTCGTACCCATGGCTGTCGTTACTTGGTCTTAGATGAAGTTGACGAACTCCTTTCGTTCAATTTCCGGGAGGACATGCACAGAATATTGGAACACGTAGGAAGGAGGTCTGGTGCAGACCCACATGGTACAAAAAGCCCACTTGAAAGGCGGACTGAGCGGCAAACCATCATGGTGTCTGCAACAGTGCCATTTTCAGTGATAAGAGCAGCTAGGAGCTGGGGGCGTGACCCACTGCTTGTTCAAGCCAAAAGTGTAATCCCACTCGAGTCTCTACCTACTGGACCTGTTAATTTGTTAGGGCCTACATCCACTTCGAGTTCAAGCTCAAGCTTGCAGACTCAGGCAGCAGCAGAGGGCCTGCCACCAGTTTTGAAACATTATTTCTGTGTCACAAAGTTGCAGCACAAGATCGATACATTGAGAAGGTGCGTTCATGCACTCGATGCCAAGTGTGTGATAGCTTTCATGAATCACACCAAGCGGCTAAAGGATGCCGTCTTCAAGCTGGAGGCTCGTGGGATGAAAGCCGCTGAGCTACATGGGGATCTTGGCAAGCTTGCCAGATCAACAACTTTGAAGAAATTCAAGAATGGGGAAGTGAGGGTTCTGGTGACAAACGAGCTTTCTGCCAGGGGTTTGGATGTGTCCGAGTGTGATCTTGTGGTTAATCTGGACTTACCCACAGACTCAATTCACTATGCACATCGAGCTGGCAGGACAGGTCGACTTGGCAGGAAGGGTACTGTGGTCAACATATGTGAGGAGCCAGAAGTGTTTGTTGTAAAGAAACTGCAGAGGCAGCTTGGGGTCCCCATTCAGGCTTGTGAGTTCACAGAGGGCAAGCTTGTTGCAACCACAGATGAGGAGAAAACCTTAGAGGCTGTGAAGTAA 1674 0.4665 MQALASTRLLLLVGDCLPVGKLLHVSRFHGSVRFLSRVDREHGPLTLASLGFKSEFETTKGNKTKPLHQLNAVPEVSKNKVKAVRSNEMKAVGTKKSIEIEAAPFAAKSFSELGLPPLLIDRLEREGFSVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYLLPILSEVGPLKNKPPNADNTSRNKMEIEAVILAPSRELGMQIVREVEKLLGPADKKLVQQLVGGANRTRQEEALKKNKPSIVVGTPGRIAEMSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGADPHGTKSPLERRTERQTIMVSATVPFSVIRAARSWGRDPLLVQAKSVIPLESLPTGPVNLLGPTSTSSSSSSLQTQAAAEGLPPVLKHYFCVTKLQHKIDTLRRCVHALDAKCVIAFMNHTKRLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVSECDLVVNLDLPTDSIHYAHRAGRTGRLGRKGTVVNICEEPEVFVVKKLQRQLGVPIQACEFTEGKLVATTDEEKTLEAVK* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0438 557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 544 IPR001650 -
Vvi2g0438 557 Gene3D - 71 344 IPR027417 -
Vvi2g0438 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 538 IPR027417 -
Vvi2g0438 557 SMART ultradead3 127 355 IPR014001 -
Vvi2g0438 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 342 IPR027417 -
Vvi2g0438 557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 341 IPR014001 -
Vvi2g0438 557 CDD DEADc 119 342 - -
Vvi2g0438 557 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 108 136 IPR014014 GO:0003724
Vvi2g0438 557 CDD SF2_C_DEAD 385 514 - -
Vvi2g0438 557 SMART helicmild6 424 505 IPR001650 -
Vvi2g0438 557 Gene3D - 383 548 IPR027417 -
Vvi2g0438 557 Pfam DEAD/DEAH box helicase 132 327 IPR011545 GO:0003676|GO:0005524
Vvi2g0438 557 Pfam Helicase conserved C-terminal domain 398 505 IPR001650 -
Vvi2g0438 557 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 27 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0438 Vvi-Chr2 3725014 3726687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0438 109 533 Eukaryotic Initiation Factors Gene Family AT3G19760 26.056 1.84e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0438 - - vvi:100252990 1077.77