Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0436 ATGGCACCATTGCCGGTTGAACAGACCGGCGAATCACTAGCCGGAGAATCACAGAGATCGCTCCCGACGCCGTTTCTGACGAAAACATATCAGCTTGTGGACGATCCGGCTGTGGACGATCTTATTTCGTGGAACGAAGACGGATCAACCTTCATCGTTTGGCGACCTGCTGAATTTGCGAGGGATTTGCTTCCGAAGTACTTCAAACACAATAACTTCTCAAGCTTCGTTCGACAGCTAAACACTTATGGATTTCGTAAGGTTGTGCCCGACCGATGGGAGTTCGCCAACGACTACTTCCGCAAAGGAGAAAAAGCGCTTTTGCGAGACATACAGCGCCGGAAAATCTCGCCGATGGCTGCCGCTGCAGCGACGACGGTGACGGTTGCGGCAGTCCTTCCCGTTGTTGCTCGGGCGGTGTCTCCGACGAATTCCGGCGATGAACAAGTTCTCTCTTCGAACTCATCACCCGCCACCGTACCCGTTACGGTGCATCGCACCTCAAGCTGCTCCAGTACGCCTGAGATTCTAGAAGAGAACGAACGGCTCAGGAGGGAGAACTCGCAACTAACTCAGGAACTAACGCAGTTGAGGGGCTTGTGTAATAACATACTCGCTCTGATGACAAACTACGCCGCCGGCCAAATTGACGCAGGAGGTATTCCGGAAGGCAGGCCGCTGGACTTGTTGACGGAGAGACAGTTGCCTGTGGAAGCCGGACAGAGTGGCGTCAAGGCCGAGGGCGATTTAAGCCCACGATTATTCGGTGTTTCCATCGGCGTGAAGCGCGTCAGAAGAGATGAAGAGGAGGAGTCAGAGAAGGAAGCTCAGACCCAGCAACAAGAGGTGAAATCAGAGCCGTTGGATGGAAGTTCTGATCATCATCAAGACCCTCCGTGGCTAGAACTCCGCAGTTGA 918 0.537 MAPLPVEQTGESLAGESQRSLPTPFLTKTYQLVDDPAVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDYFRKGEKALLRDIQRRKISPMAAAAATTVTVAAVLPVVARAVSPTNSGDEQVLSSNSSPATVPVTVHRTSSCSSTPEILEENERLRRENSQLTQELTQLRGLCNNILALMTNYAAGQIDAGGIPEGRPLDLLTERQLPVEAGQSGVKAEGDLSPRLFGVSIGVKRVRRDEEEESEKEAQTQQQEVKSEPLDGSSDHHQDPPWLELRS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0436 305 Coils Coil 266 286 - -
Vvi2g0436 305 Coils Coil 173 200 - -
Vvi2g0436 305 MobiDBLite consensus disorder prediction 263 280 - -
Vvi2g0436 305 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g0436 305 MobiDBLite consensus disorder prediction 263 305 - -
Vvi2g0436 305 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g0436 305 MobiDBLite consensus disorder prediction 287 305 - -
Vvi2g0436 305 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g0436 305 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g0436 305 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g0436 305 Gene3D - 17 115 IPR036388 -
Vvi2g0436 305 FunFam Heat stress transcription factor B-4 17 115 - -
Vvi2g0436 305 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Vvi2g0436 305 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 245 IPR027725 -
Vvi2g0436 305 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0436 Vvi-Chr2 3719190 3720336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0436 16 303 HSF AT4G11660 54.769 2.37e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi2g0436 HSF_DNA-bind 8.3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0436 K09419 - vvi:100256486 566.614