Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0434 ATGTCGACCACAGGGTCAACGGAACGGGCGTCTGATGACATCATCGATGCGTCGACGCCGCTGCTTGGGAATGCGGCGGAAGGTCGGGATGATGATCGGAGCCGTCGATCTGTACGGAGACAGAGCCTTCGGGAGGCTGCGCGGTTTCTGCGGCGAGCGAGCAGCCGCCGGATGATGCGGGAGCCGTCGATGTTGGTGAGGGAGACGGCGGCGGAGCAGTTGGAGGAGCGGCAAAGCGATTGGGCGTATTCGAAGCCGGTGGTGGTTCTGGACATGATTTGGAACTTTGCGTTCGTGGTCGTGGCGGCGGCGGTTTTGGTTCTCAGTCGGCGTGAGTCGCCGTCGATGCCGCTGAGATTTTGGATTGTGGGGTACGCTTTGCAGTGCATTCTGCACATTGTTTGTGTGTCTGTTGAGTACCGGCGGAGGCGCCGGCGGGCTGGGGTGTTTGGGTCGGAGGACGACGGAATTGGCAGCGGCGGGAGCTACAGTTCAAGCCCGCAGGGGGATTCGTCACAGTATGTTACGTTGGCCAGTCTGGGTGATGAGTCTTCTACAAGTGTTGCAAAACATTTGGAATCTGCAAATACCATGTTCTCATTTATCTGGTGGATCATTGGGTTCTATTGGGTATCTGCGGGCGGCCAAGCTTTGGCACGGGACTCCCCTCAGCTCTACTGGTTATGTATAATTTTTCTGGGTTTTGATGTGTTCTTTGTTGTTTTCTGCGTTGCACTGGCATGTGTCATTGGAATTGCTGTTTGTTGCTGTCTTCCATGTATCATTGCAATTTTATATGCTGTGGCTGATCAGGAAGGAGCATCTAAAGAAGACATTGATCAACTTTCAAGGTTTAAATTCCGGAAGGTTGGTGATATTGAGAAAATTGATGGTGACATTCAAGGAGCTTGTGGAGGAATAATGACTGAATGTGGCACAGATGCACCCACAGAACATGTTCTTTCACAGGAGGATGCGGAGTGTTGCATTTGCCTGTCTGCTTACGATGATGGGGTTGAGCTGCGGGAACTCCCTTGTGGGCACCATTTCCACTGTACCTGTGTTGATAAGTGGCTCTATATCAATGCTACATGTCCTCTCTGCAAATACAACATTTTGAAGAGTAGCAGCAATGGCCGGGAGGAAGTGTAG 1152 0.5217 MSTTGSTERASDDIIDASTPLLGNAAEGRDDDRSRRSVRRQSLREAARFLRRASSRRMMREPSMLVRETAAEQLEERQSDWAYSKPVVVLDMIWNFAFVVVAAAVLVLSRRESPSMPLRFWIVGYALQCILHIVCVSVEYRRRRRRAGVFGSEDDGIGSGGSYSSSPQGDSSQYVTLASLGDESSTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPQLYWLCIIFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASKEDIDQLSRFKFRKVGDIEKIDGDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHHFHCTCVDKWLYINATCPLCKYNILKSSSNGREEV* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0434 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Vvi2g0434 383 SMART ring_2 328 368 IPR001841 -
Vvi2g0434 383 MobiDBLite consensus disorder prediction 1 38 - -
Vvi2g0434 383 PANTHER TARGET OF ERK KINASE MPK-1 52 374 - -
Vvi2g0434 383 SUPERFAMILY RING/U-box 318 375 - -
Vvi2g0434 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 382 IPR013083 -
Vvi2g0434 383 FunFam E3 ubiquitin-protein ligase At1g12760 314 379 - -
Vvi2g0434 383 Pfam Ring finger domain 327 369 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0434 Vvi-Chr2 3670904 3678096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0434 16 376 C3H Transcription Factor Family AT1G68070 49.046 1.13e-118 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0434 - - vvi:100251339 667.922