LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g0433	ATGGCGTCATCGTCTTCGATGAGCAACTACGACATGCCATGGGTGGAGAAGTATAGACCCACCAAAGTAGCAGATATTGTTGGCAACGAAGATACCGTCTCTAGGCTCCAAGTCATAGCTCGCGATGGCAATATGCCAAATCTGATCTTATCGGGCCCTCCTGGAACTGGCAAAACCACGAGTGTATTGGCTCTTGCACACGAGCTTTTGGGAGCAAATTACAGGGAGGCGGTATTAGAGTTAAATGCATCAGATGACAGGGGCATTGATGTAGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTTCTGGGAGTCACAAAATAGTCATATTGGATGAAGCTGACAGCATGACAACTGGAGCGCAACAAGCATTGAGACGGACAATGGAAATATATTCAAATTCCACTCGCTTTGCCCTTGCGTGCAATATCTCCTCCAAAATTATTGAGCCTATTCAGAGTAGATGTGCCATTGTTCGATTTTCAAGATTATCTGATCAGGAGATCCTTGGTCGACTGATGGTGGTGGTTGAAGCAGAGAAGGTTCCTTTTGTCCCGGAAGGTCTTGAAGCAATCATCTTTACTGCTGATGGTGATATGAGGCAAGCATTAAATAACTTGCAAGCTACATACAGCGGATTCCGGTTTGTCAACCAAGAAAATGTTTTTAAGGTCTGTGACCAACCTCATCCTTTGCATGTGAAGAATATGGTCCGTAATGTACTTGAGGGGAAATTTGATGATGCTTGTTATGGATTGAAGCAGCTGTATGATCTTGGTTATTCCCCCACTGACATAATCACAACCCTTTTCCGAATCATTAAAAATTATGACATGGCTGAATACCTGAAATTAGAATTCATGAAGGAAACTGGCTTCGCCCATATGAGAATCTGTGATGGAGTTGGTTCGTATCTTCAGCTATGCGGTCTCCTTGCCAAGCTTGCTGTTGTTAGGGAAACAGCAAAAGCATTTTGA	993	0.432	MASSSSMSNYDMPWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHELLGANYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPSGSHKIVILDEADSMTTGAQQALRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEAEKVPFVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACYGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLAVVRETAKAF*	331

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi2g0433	330	Pfam	Replication factor C C-terminal domain	234	319	IPR013748	-
	Vvi2g0433	330	SUPERFAMILY	post-AAA+ oligomerization domain-like	233	324	IPR008921	GO:0003677\|GO:0006260
	Vvi2g0433	330	PANTHER	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	12	314	-	-
	Vvi2g0433	330	FunFam	replication factor C subunit 2	234	326	-	-
	Vvi2g0433	330	CDD	AAA	27	164	-	-
	Vvi2g0433	330	Gene3D	-	5	169	IPR027417	-
	Vvi2g0433	330	Pfam	ATPase family associated with various cellular activities (AAA)	48	166	IPR003959	GO:0005524\|GO:0016887
	Vvi2g0433	330	FunFam	Replication factor C subunit 4	170	233	-	-
	Vvi2g0433	330	SMART	AAA_5	44	170	IPR003593	GO:0016887
	Vvi2g0433	330	CDD	HLD_clamp_RFC	169	231	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi2g0433	Vvi-Chr2	3662441	3666724	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi2g0433	10	329	Core DNA Replication Machinery Family	AT1G63160	91.250	0.0	619

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g0433	K10755		-	vvi:100246202	652.129

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