LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g0431	ATGGGTAAAGCATCCAAGTGGTTTCGTGGACTCCTCGGCCTGAAGAAGACTGATTCACCGGCGCCGACCCCGGCTCCGGCACCAGCTCGCCTGGACAAGTCGGTGAAGCGGAGGTGGAGTTTCGTGAGATCATACAGAGAGAAGGATCACACCAGACACGCTAATGACCGCAGAGGAGCCCTGTACGGAGAGCCGCATCCGCCTTCGGCGTACGCAGACGGTGTTGATCCGAACAAGCACGCGATTGCAGTTGCGGCTGCCACCGCTGCGGTAGCGGAGGCCGCCGTAGCTGCAGCTCAGGCCGCTGCGGCGGTGGTGAGGCTCACCAGTAGCGGGAGGTCAGCGGCTCCCTCGGCGTACGTTAGCGCTGGCTTCTCGGCGCGAGAAGAGTGGGCTGTTATAAAAATTCAATCTCTTTTCCGTGGTTACCTGGCGAGAAGGGCATTGCGAGCATTGAAAGCATTGGTGAAGCTACAGGCATTGGTGAGAGGCCACATTGTGAGGAAGCAAACTGCAGATATGTTACGACGCATGCAAGCTTTGGTGAGAGCTCAAGCTCGAGCACGCGCGGGACGAGCCCAGATTTCTGAATCATCACATTCAAGTGGCAAGTCTTCTCAATTCCACCACCCTGGCCCTGCAACCCCTGAAAAGTTTGAACATGCCATTCGGGCAAAGAATATGAAACAAGACCAGTCTTCTATACTCAAGAGAAATAGCTCAAAGGCGAGTGGCAGGAACATCATTGATCAAGACAAAACTCACTTGAGTAGGAACTGGTCAGACCGTAGACTGGATGAAGGATCATGGGACCAACAAGGGTCCTCAATAAGAGCCGGTCCAACAGATGATGAAAAGAGTGACAAGATACTGGAAATTGATACAGGGAAACCCAATTTCACTCCTAAACGCAGAAACCTGTTTCAATCTTCTCATCATGGTGTGGCTTCAGATCAAATTAGTCATAGCTTTACTACTTCAAAAGATTCAACAACTCATCAAACAGTTCCCAGTCCATCATCTTGTGAAGTTCAATCTTTAAGCCCTTTGAAATTCTGTCAGGAGGTTGAAGAAGGCTCCTTTTGCACTGCTGATAATAGTCCACAATTCTATTCGGCATCATCAAGAGCTGGTAGTTCAAGGAGAGGTCCCTTCACTCCCACCAAGAGCGATGGCTCAAGAAGCTACCTGAGTGGTTACTCAGACCATCCAAACTACATGGCTTACACAGAATCCTCGAAGGCTAAAGTGAGGTCTTTCAGTGCCCCAAAACAAAGGCCTCAATACGAAAGATCTAGTTCAACAAAGAGGTATTCTGTTCATGGATTTGGTGATTCAAGGTCAAATGCACAAAGGGTTTCTGCAATGCATGCCAACTTCACCAGCAAAGCTTATCCTGGATCTGGACGCTTGGATAGACTTGGAATGCCAATAAGAAGTGAAGCTTTTGGTCTCAGTGGTGGGTTTAGCAACAGCAGATATTAG	1485	0.4963	MGKASKWFRGLLGLKKTDSPAPTPAPAPARLDKSVKRRWSFVRSYREKDHTRHANDRRGALYGEPHPPSAYADGVDPNKHAIAVAAATAAVAEAAVAAAQAAAAVVRLTSSGRSAAPSAYVSAGFSAREEWAVIKIQSLFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQALVRAQARARAGRAQISESSHSSGKSSQFHHPGPATPEKFEHAIRAKNMKQDQSSILKRNSSKASGRNIIDQDKTHLSRNWSDRRLDEGSWDQQGSSIRAGPTDDEKSDKILEIDTGKPNFTPKRRNLFQSSHHGVASDQISHSFTTSKDSTTHQTVPSPSSCEVQSLSPLKFCQEVEEGSFCTADNSPQFYSASSRAGSSRRGPFTPTKSDGSRSYLSGYSDHPNYMAYTESSKAKVRSFSAPKQRPQYERSSSTKRYSVHGFGDSRSNAQRVSAMHANFTSKAYPGSGRLDRLGMPIRSEAFGLSGGFSNSRY*	495

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi2g0431	494	ProSiteProfiles	IQ motif profile.	129	157	IPR000048	GO:0005515
	Vvi2g0431	494	Pfam	Protein of unknown function (DUF4005)	367	441	IPR025064	-
	Vvi2g0431	494	Gene3D	-	126	182	-	-
	Vvi2g0431	494	ProSiteProfiles	IQ motif profile.	153	180	IPR000048	GO:0005515
	Vvi2g0431	494	MobiDBLite	consensus disorder prediction	46	72	-	-
	Vvi2g0431	494	PANTHER	IQ-DOMAIN 5-RELATED	1	441	-	-
	Vvi2g0431	494	MobiDBLite	consensus disorder prediction	46	60	-	-
	Vvi2g0431	494	MobiDBLite	consensus disorder prediction	417	443	-	-
	Vvi2g0431	494	SMART	iq_5	128	150	IPR000048	GO:0005515
	Vvi2g0431	494	SMART	iq_5	151	172	IPR000048	GO:0005515
	Vvi2g0431	494	MobiDBLite	consensus disorder prediction	325	344	-	-
	Vvi2g0431	494	Pfam	IQ calmodulin-binding motif	131	150	IPR000048	GO:0005515
	Vvi2g0431	494	Pfam	IQ calmodulin-binding motif	153	170	IPR000048	GO:0005515
	Vvi2g0431	494	MobiDBLite	consensus disorder prediction	367	397	-	-
	Vvi2g0431	494	MobiDBLite	consensus disorder prediction	248	269	-	-
	Vvi2g0431	494	MobiDBLite	consensus disorder prediction	228	247	-	-
	Vvi2g0431	494	MobiDBLite	consensus disorder prediction	189	305	-	-
	Vvi2g0431	494	MobiDBLite	consensus disorder prediction	192	209	-	-
	Vvi2g0431	494	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	128	174	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi2g0431	Vvi-Chr2	3644809	3648661	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi2g0431	1	478	IQD Protein Family	AT4G23060	46.241	5.33e-87	274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g0431	-		-	vvi:100254717	882.863