Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0430 ATGGCCGCCGACGACGTGTACAGGGCCCTGATGGATCGGTTTCGGAGCTTGGAGCAGAGCCAGGCGAATATGAGAGCCCAGTTGGAGGTGCTGATGGAGGAGCGGAGCAAGGAGGAGAAGGACGGCGGCACTCTGTGGCCGGACAGCGGATGGGGTCACGTTCCGGGGTATTTCTCCGGCGGGGGTCCGTGCCGGAGTGTCTTGGATTCAATGGGTCACTCTGTTTATGCGTTCACGCCTTGGTCTGGGGAGATTTTTTTCTGGAATCGTTCAGCTGAAAAACTCTATGGGTGGAAGGATTGTGAGGTTCTTGGGCAAAGAGTTGTTGACGTTCTTATTGATGAAGCATATTATACACATGTTAAAAAAATCATGGAAAAGTTGACCAATGGGCAATCATGGTCAGGTCAGTTTCCTCTTAAGAAGAGGTCTGGTGAGATATTTATGGCTATAGTGACAAAAAGCCCATTATACGAGGACGGTGATTTTGTTGGTGTTATCACTGTTTCAAGTGATGCAGCTTTATTTAATAATATAACCTCTCAATATCTGAGAGCATATGAGGATCATGCTAATTGCCAACATAGAGTACGGGAGTTAAACCTGAAAAAGATTCAGTGGCAATCACAGCCACAGATTGCATCGTCTGTTTCAAATCCGGCCTCAAAAGTTCTGTCACAAAATTGTGGGGAGGATGCATGCAATCCATTTGCAAGTTCCCAAGAAAAGGGGAAGAACATGCTGGATGCCAAAGATAAGAGTTCAGAGAAGTCTGAAACACTAGCAGCAAAGGTATTAGCGAAGTTGCGCATCAGGGGAAGTGGAAAAAATGCAAAAGAAGATGATAGAAGTTTTCAACAAAATAATTCATCCTATTCTTCAGTATGCAATGAAGTAATAAAAGAGCCAAATTATCATAGAGATGCAAAAGAATCATGTCCAAACTGCCGCAATTTTGATACCAGGTATAAGGGAGAAAATCCCAAGAAAAAAATTGTTTCCTTTGCTGCAGAAAGAGAATATTCAAATGGTAATGAGCACAGGATTCCAAATACTCCTGGAGAGGGTTCTTCCAAAGAGTGCCACAACTGTTTTGCAGTGCCCAGACTCAGATGTTCATCTCCAATATTAACCTTTCAATTGGATGCAAAGGAGTCAGAGCCAGAACTAGAGGACTTGAAAGTCCTGGGGATACAAAGTTCAGTGCAACAGCACCCAGATGTCAATCAATCTCCAGGCACAGGGGGAAGCATCAATAGCAACAATGGAAGTTCATCAAGTAAAACAGATAGTGAGTCAAGCTCAGTCTCAGATTGTGAGATTCAGTGGGAAGACTTACATTTTGGTGAGGAGATTGGCCGAGGTTCATATGCTGCTGTCTATCATGGAATTTGGAATGGATCGGATGTTGCAATTAAGGTTTATTTTGGGAATGAATACAGCGAAGGGACTTTACAAGACTATAAAAAAGAGATTGATATAATGAGGAGATTGAGACATCCAAATGTATTGCTTTTCATGGGAGCAGTATATTCACAAGAGCGACTTGCCATTGTTACAGAGTTGTTACCCAGGGGAAGCCTCTTCAGAGTACTTCACAAAAGCAATCAGGTCTTAGACATCAGGCGGCGTCTCCGGATGGCTCTTGATGTTGCTAGAGGTATGAATTATTTGCATCACAGGAATCCACCAATAGTACATAGAGACCTGAAATCTTCAAACCTGCTAGTTGACAAAAATTGGAATGTCAAGGTTGGTGACTTTGGTCTGTCAAAGTTGAAGCACACTACTTTCTTGACTGCAAAATCTGGAAGAGGAACGCCTCAGTGGATGGCTCCTGAAGTCCTCCGAAACGATCCTTCAAATGAAAAGTGA 1875 0.4336 MAADDVYRALMDRFRSLEQSQANMRAQLEVLMEERSKEEKDGGTLWPDSGWGHVPGYFSGGGPCRSVLDSMGHSVYAFTPWSGEIFFWNRSAEKLYGWKDCEVLGQRVVDVLIDEAYYTHVKKIMEKLTNGQSWSGQFPLKKRSGEIFMAIVTKSPLYEDGDFVGVITVSSDAALFNNITSQYLRAYEDHANCQHRVRELNLKKIQWQSQPQIASSVSNPASKVLSQNCGEDACNPFASSQEKGKNMLDAKDKSSEKSETLAAKVLAKLRIRGSGKNAKEDDRSFQQNNSSYSSVCNEVIKEPNYHRDAKESCPNCRNFDTRYKGENPKKKIVSFAAEREYSNGNEHRIPNTPGEGSSKECHNCFAVPRLRCSSPILTFQLDAKESEPELEDLKVLGIQSSVQQHPDVNQSPGTGGSINSNNGSSSSKTDSESSSVSDCEIQWEDLHFGEEIGRGSYAAVYHGIWNGSDVAIKVYFGNEYSEGTLQDYKKEIDIMRRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFRVLHKSNQVLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWNVKVGDFGLSKLKHTTFLTAKSGRGTPQWMAPEVLRNDPSNEK* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0430 624 SMART serkin_6 446 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0430 624 ProSiteProfiles Protein kinase domain profile. 446 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0430 624 FunFam Serine/threonine-protein kinase isoform 1 437 524 - -
Vvi2g0430 624 SUPERFAMILY Protein kinase-like (PK-like) 426 619 IPR011009 -
Vvi2g0430 624 MobiDBLite consensus disorder prediction 403 436 - -
Vvi2g0430 624 Coils Coil 14 41 - -
Vvi2g0430 624 ProSiteProfiles PAS repeat profile. 82 132 IPR000014 -
Vvi2g0430 624 CDD PAS 83 172 IPR000014 -
Vvi2g0430 624 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 260 619 - -
Vvi2g0430 624 SUPERFAMILY PYP-like sensor domain (PAS domain) 65 172 IPR035965 -
Vvi2g0430 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 565 577 IPR008271 GO:0004672|GO:0006468
Vvi2g0430 624 NCBIfam PAS domain S-box protein 82 172 IPR000014 -
Vvi2g0430 624 Pfam Protein tyrosine and serine/threonine kinase 446 619 IPR001245 GO:0004672|GO:0006468
Vvi2g0430 624 Pfam PAS fold 82 167 IPR013767 GO:0006355
Vvi2g0430 624 Gene3D Transferase(Phosphotransferase) domain 1 524 624 - -
Vvi2g0430 624 Gene3D PAS domain 77 175 - -
Vvi2g0430 624 CDD STKc_MAP3K-like 452 624 - -
Vvi2g0430 624 Gene3D Phosphorylase Kinase; domain 1 434 523 - -
Vvi2g0430 624 ProSitePatterns Protein kinases ATP-binding region signature. 452 473 IPR017441 GO:0005524
Vvi2g0430 624 MobiDBLite consensus disorder prediction 236 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0430 Vvi-Chr2 3631707 3638664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0430 6 624 MAP Kinase Kinase Kinase AT4G23050 42.492 2.65e-162 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vvi2g0430 PK_Tyr_Ser-Thr 2.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0430 - - vvi:100244444 1248.03