Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0419 ATGTTGGCTGGGTGTTCTACATTGTTGTCGCCCAGACATAGATTGAGGAGTGAAACATCTGCACAGTTTCAAGCTTGCCATTTCCAGTTACCTTCAATGAGCACACAGAGATTGGATTTGCCATGTAGCTTCCCCCGAAAAGATGCTTCACGGTCGCAGCCCATTAGGCCGGTCGGCCTTTCTGTGGAGAAGTCCATGGAAGCCAAGACTAGTACTTGTTCTCTAAAGCAGAATATTCGGCTCCCACCTTCAGCAACCAGTGCTCAGACCACCTTCATCGAAGGAAGGAGGGAGATCAAAGATGAGTTTTGGGAGAAAGGTAAGAGTTTGAAGAGGTTTGCTGAGCAGGGTTCAGTGGACGAGTCCTGCATGAGCAGAGCCAAGAGAAAAAGGAGAAGCCAACTGGGTAGTGGGAATTTTTGGTTTCAGCCAAGTTTTGGGGTGCCTAGATCAGTTCCAGGCGTTGGAAACAACCCTCAAGTTTCTTTCCCTCTGACTTGTTCAGGAGAGGAAGAGAGGGTCTGTTTTGTGCCTAGTGAGGTGATTTCCCCACCTCTTCCATTGTCAAACAATCCTTGGCTGGAATCTGTAGTGACTGAGATTACAAGCCTTGGTGACAATGATTTGGAGACCAGCCATGGAGTTGTTAAGGAAGCCTCCGGATCCAGTAATTCTTCAGAGAGTCATCCCTTGGCCCTTAGGCTACATGAGAGCACTGTAGAGCAGGAAATCGGTAATGGGTCGAGCCTACCTCACCTGCATGAAGGCCCTAAGATGTCAGGGGACGACGAAAACAACCAAGGGGAGCATCAAGGTTTCGAGCTCATCAGCCTGCTTATGGCTTGTGTTGAAGCAATTGGCTCAAGGAACATAGCTGCCATCAGCCATTTCATAGCTAAATTGGGGGATCTTGCCTCTCCAAAAGGAAGTCCTATAAGCCGTGTTACTGCTTACTTCACAGAAGCTTTAGCTCTGCGGGTCTCAAGGCTTTGGCCTGCTATCTTCCATGTTACTACCCCTCGAGAGCTTGATCGGGCAGATGATGACACTTGGACTGCACTGAGGCTTTTGAACCAGGTGAGCCCAATTCCAAAATTCATTCACTTCACATCCAATGAGATTCTGTTGAGGGCTTTTGAAGGAAAAGACAGGGTTCATATCATAGATTTCGACATTAAGCAAGGGCTTCAATGGCCTAGTTTGTTTCAGAGTTTGGCCTCTAGGACTAATCCCCCGAGCCACGTTAGAATCACTGGGGTAGGCGAGTCTAAACAAGAACTGAACGAAACAGGAGATAGGCTTGCAGGTTTTGCTGAAGCATTGAACCTTCCCTTTGAATTCCATCCGGTGGTGGACAGGTTGGAAGATGTGAGGCTGTGGATGCTTCATGTGAAGGACAAGGAAAGTGTGGCTGTGAACTGTATTTTCCAACTGCACAAGACTCTTTATGATGGCAGTGGAGGAGCCCTCAGGGACTTTCTAGGCCTAATCCGGAGCACAAACCCCAGTATTGTTCTTATGGCGGAGCAAGAAGCTGAGCACAATGAACTCAGCTTGGAAACAAGAGTTTCTAACTCACTGAGATACTACTCTGCCATATTTGATTCAATTGATTATAGTCTTCCATTGGATAGCCCAGTGAGGATGAAAGTAGAGGAGATGTTTGCTCGGGAAATTAGGAATATAATTGCATGTGAAGGAAGTGACAGGGTAGAAAGGCATGAAAGTTTCGAAAAGTGGAGGAGGCGGATGGAGCAAGGAGGGTTTCGATGCGTGGGGATCAGCGAAAGGGAAATGCTTCAGAGCCAAATGCTGTTGAAGATGTACTCCTGTGAGAATTATAGTGTTTCAAAGCGAGGCCAAGATGCGGCGCTTACTCTAAGTTGGCTAGATCAGCCTCTTTACACGGTCTCAGCATGGACTCAGGTGGATGTTGCAGGCAGCTCTTCCTCTTTTTCTCTGCCAAGTTGA 1971 0.4759 MLAGCSTLLSPRHRLRSETSAQFQACHFQLPSMSTQRLDLPCSFPRKDASRSQPIRPVGLSVEKSMEAKTSTCSLKQNIRLPPSATSAQTTFIEGRREIKDEFWEKGKSLKRFAEQGSVDESCMSRAKRKRRSQLGSGNFWFQPSFGVPRSVPGVGNNPQVSFPLTCSGEEERVCFVPSEVISPPLPLSNNPWLESVVTEITSLGDNDLETSHGVVKEASGSSNSSESHPLALRLHESTVEQEIGNGSSLPHLHEGPKMSGDDENNQGEHQGFELISLLMACVEAIGSRNIAAISHFIAKLGDLASPKGSPISRVTAYFTEALALRVSRLWPAIFHVTTPRELDRADDDTWTALRLLNQVSPIPKFIHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGVGESKQELNETGDRLAGFAEALNLPFEFHPVVDRLEDVRLWMLHVKDKESVAVNCIFQLHKTLYDGSGGALRDFLGLIRSTNPSIVLMAEQEAEHNELSLETRVSNSLRYYSAIFDSIDYSLPLDSPVRMKVEEMFAREIRNIIACEGSDRVERHESFEKWRRRMEQGGFRCVGISEREMLQSQMLLKMYSCENYSVSKRGQDAALTLSWLDQPLYTVSAWTQVDVAGSSSSFSLPS* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0419 656 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 227 637 IPR005202 -
Vvi2g0419 656 MobiDBLite consensus disorder prediction 244 267 - -
Vvi2g0419 656 ProSiteProfiles GRAS family profile. 266 641 IPR005202 -
Vvi2g0419 656 Pfam GRAS domain family 275 641 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0419 Vvi-Chr2 3511310 3513340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0419 1 641 GRAS Transcription Factor Family AT1G63100 57.625 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi2g0419 GRAS 1.6e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0419 - - vvi:100247949 1283.09