Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0417 ATGTCTTTCAGTGGGACAACACAGAAATGCAAGGCCTGTGATAAGACTGTCCATATCATTGATACAATATCAGCTGATGGAATTGCTTATCATAAGACCTGCTTCAGATGCAGTCACTGCAATGGACCTCTTGTGATGAGCAACTACTCTTCCATGGATGGAGTCTTGTACTGCAAGCCTCATTTTGAGCAACTCTTCAGGGAATCTGGCAGTTTGAGTAAGAAGTTCCAATCATCTGGCAAGGCAGATCTGTCTAGGACTCCCAGCAAACTCTCCTCCATGTTCTCGGGGACCCAAGACAAATGCTCCTTGTGTAAGAAAACCGTATACCCACTTGAGAAGGTGACGGTGGAGGGAGAATTTTACCATAAATCATGCTTCAGGTGTTCTCATGGGGGTTGCTTCCTCACACCCTCATCCTATGCCGCTCTAGATGGAATCCTCTACTGCAAGCCTCACTTTACTCAGTTGTTCAGGGAGAGAGGCAGCTACAGCACTCTCAACAAGACTGCTTCAATGAAGAAAAGTACTGCTGCAGCGCCATTGCCGGACCAAAACTCTGGACAAGAACAGCTGGCCACCACGCCGGAGGAAGATCCAACACCAGGATCAGAACCAGAGCCTGGCCACACCCAAGAACAATCATAA 648 0.4784 MSFSGTTQKCKACDKTVHIIDTISADGIAYHKTCFRCSHCNGPLVMSNYSSMDGVLYCKPHFEQLFRESGSLSKKFQSSGKADLSRTPSKLSSMFSGTQDKCSLCKKTVYPLEKVTVEGEFYHKSCFRCSHGGCFLTPSSYAALDGILYCKPHFTQLFRERGSYSTLNKTASMKKSTAAAPLPDQNSGQEQLATTPEEDPTPGSEPEPGHTQEQS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0417 215 FunFam LIM domain and actin-binding 1 96 166 - -
Vvi2g0417 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vvi2g0417 215 FunFam LIM domain and actin-binding 1 4 74 - -
Vvi2g0417 215 SMART lim_4 9 61 IPR001781 -
Vvi2g0417 215 SMART lim_4 101 153 IPR001781 -
Vvi2g0417 215 Pfam LIM domain 10 65 IPR001781 -
Vvi2g0417 215 Pfam LIM domain 102 157 IPR001781 -
Vvi2g0417 215 ProSiteProfiles LIM domain profile. 100 160 IPR001781 -
Vvi2g0417 215 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vvi2g0417 215 MobiDBLite consensus disorder prediction 172 215 - -
Vvi2g0417 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 94 127 - -
Vvi2g0417 215 PANTHER OS06G0237300 PROTEIN 82 199 - -
Vvi2g0417 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vvi2g0417 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 166 - -
Vvi2g0417 215 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vvi2g0417 215 Gene3D Cysteine Rich Protein 4 74 - -
Vvi2g0417 215 Gene3D Cysteine Rich Protein 96 166 - -
Vvi2g0417 215 CDD LIM2_SF3 102 162 - -
Vvi2g0417 215 MobiDBLite consensus disorder prediction 172 198 - -
Vvi2g0417 215 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0417 Vvi-Chr2 3496566 3497741 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vvi2g0417 LIM 2.1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0417 - K24413 vvi:100242820 445.277