Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0413 ATGTACTCGTCTATCCTTCGACGACATTCCAGCTCCTCCTCGAAGCTTCTCTGCACCTTCTTCTTCGCCCGCCCAATGGGCGGCGGTCCAAGAACCTTTCCCGGCGGTATCAACAAATGGCAATGGAAACGTCTCCACGAGAAGAAAGCCAGGGAGAAGGAGAAGAGACTTCTCGACCACGAGAAACAGCTCTACGAAGCCCGAATCCGATCGCAAATCCGGGCCAAACTCGCTGGGAAACCCGTTTCCGAATTCTCTCCGGATTCGGATCATCCGAATCACAACCCCATGTCCCCCCAAGACCACATCAAAGCCCTCGCTGATCGGTTCATGAAGGAAGGCGCCGAAGACCTCTGGAACGACGACGACGGCCCCGTCAAATCTCCTCCACTACTGCCGCGGCGGCCATCCAATGGATTGAGTCGGCAGATTGAGCCTCCGGTTGATCTTCGGAAGTTGACATCCCATGGGCGGAGTTTGGGGCCCGGAAATGCGAGAATTGTGAGCAGGGCTTTGAAACCTAGGCATTATTCTGTGCAAGTGCGGAGGAGGTTTCGGAGAAACGAGAGTTCGTCGAGCGATGATGGTTCGGATGTGAGTTCTGGGGATGAATTTTCGGGGAGATTGGTGGATGATGATGTGGAATTGAGGGGAAGGAGAAATGTACAAAAGATGATGAGTAGTGCTGCTTTGGGGAAGTACGATGTCAAGATCAAGAGGCGGGTGATGCCGAAGTCTATTGATGAAGGGGATGATTTTTCGGAGCAAATTGAGTTGATTAGACATGAGTTGAGTAGGAAGAATTTGGCGGAGGAAGAGGAAAAAGGGGATGAAGAGTCCATTCTTAGTCAGAAAAGATTTGATGAATGTGGTGTATCTCCATTGACAGTCAAGGCACTTTCTTCAGCAGGCTATGTACAAATGACAAGGGTACAAGAGGCTACTCTTGATGTTTGCCTTGAAGGAAAGGATGCTTTAGTCAAAGCTAAAACCGGCACTGGCAAAAGTGCTGCTTTCTTGCTTCCTGCAATTGAAGCAGTTTTGAAGGCTACAAGTAGCAACAGAATTCAACGGGTGCCACCAATACTTGTTCTTATTCTCTGCCCAACAAGAGAAATTGCAAGTCAGATCGCTGCGGAAGCAAATGTTATGCTAAAGTACCATGATGGCATAGGTGTTCAAACATTAATTGGGGGTACACGTTTCAAGTTTGATCAGAAACGCCTAGAGTCAGATCCATGCCAGATTATAGTGGCTACCCCTGGTAGGTTGTTGGATCATATTGAGAATAAGGGTAGCTTCTCTGTTCGTCTGATGGGATTGAAAATGCTTGTTCTTGATGAAGCTGACCACTTACTGGACCTGGGATTCAGAAAAGACATGGAGAAAATTGTAGATTGTTTACCCCGCCAGAGGCAGTCGTTGCTGTTCTCTGCTACAGTCCCTAAAGAGGTTCGCCGAATATCTCAACTTGTTTTGAAAAAGGAACATGCTTTTGTTGATACAGTGGGTCTGGGTAATGCAGAAACTCATGCAAAAGTTAGGCAGTCTTACCTTGTTGCACCACATAAACTGCATTTTCAAATTGTGTACCACCTTTTGAAGGATCATATATTGCAAGTGCCAGATTACAAGGTGCAATGTTGTAGCTTTGGGATTTCTTTTTCCTAG 1671 0.4722 MYSSILRRHSSSSSKLLCTFFFARPMGGGPRTFPGGINKWQWKRLHEKKAREKEKRLLDHEKQLYEARIRSQIRAKLAGKPVSEFSPDSDHPNHNPMSPQDHIKALADRFMKEGAEDLWNDDDGPVKSPPLLPRRPSNGLSRQIEPPVDLRKLTSHGRSLGPGNARIVSRALKPRHYSVQVRRRFRRNESSSSDDGSDVSSGDEFSGRLVDDDVELRGRRNVQKMMSSAALGKYDVKIKRRVMPKSIDEGDDFSEQIELIRHELSRKNLAEEEEKGDEESILSQKRFDECGVSPLTVKALSSAGYVQMTRVQEATLDVCLEGKDALVKAKTGTGKSAAFLLPAIEAVLKATSSNRIQRVPPILVLILCPTREIASQIAAEANVMLKYHDGIGVQTLIGGTRFKFDQKRLESDPCQIIVATPGRLLDHIENKGSFSVRLMGLKMLVLDEADHLLDLGFRKDMEKIVDCLPRQRQSLLFSATVPKEVRRISQLVLKKEHAFVDTVGLGNAETHAKVRQSYLVAPHKLHFQIVYHLLKDHILQVPDYKVQCCSFGISFS* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0413 556 MobiDBLite consensus disorder prediction 116 167 - -
Vvi2g0413 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 495 IPR027417 -
Vvi2g0413 556 MobiDBLite consensus disorder prediction 179 206 - -
Vvi2g0413 556 SMART ultradead3 304 517 IPR014001 -
Vvi2g0413 556 Pfam DEAD/DEAH box helicase 309 487 IPR011545 GO:0003676|GO:0005524
Vvi2g0413 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 499 IPR014001 -
Vvi2g0413 556 Coils Coil 43 63 - -
Vvi2g0413 556 FunFam Putative LRR receptor-like serine/threonine-protein kinase 340 435 - -
Vvi2g0413 556 PANTHER RNA HELICASE 256 537 - -
Vvi2g0413 556 Gene3D - 262 501 IPR027417 -
Vvi2g0413 556 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 285 313 IPR014014 GO:0003724
Vvi2g0413 556 MobiDBLite consensus disorder prediction 80 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0413 Vvi-Chr2 3472607 3475501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0413 287 495 Eukaryotic Initiation Factors Gene Family AT1G72730 32.057 1.17e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0413 - - vvi:100254793 1031.94